:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'advntr' .. highlight: bash advntr ====== .. conda:recipe:: advntr :replaces_section_title: :noindex: A tool for genotyping Variable Number Tandem Repeats \(VNTR\) from sequence data :homepage: https://github.com/mehrdadbakhtiari/adVNTR :license: BSD 3-Clause :recipe: /`advntr `_/`meta.yaml `_ .. conda:package:: advntr |downloads_advntr| |docker_advntr| :versions: .. raw:: html
1.5.0-01.4.1-21.4.1-11.4.1-01.4.0-21.4.0-11.4.0-01.3.3-21.3.3-1 ``1.5.0-0``,  ``1.4.1-2``,  ``1.4.1-1``,  ``1.4.1-0``,  ``1.4.0-2``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.3.3-2``,  ``1.3.3-1``,  ``1.3.3-0``,  ``1.3.2-1``,  ``1.3.2-0``,  ``1.3.1-0``,  ``1.3.0-1``,  ``1.2.0-0``,  ``1.1.1-1``,  ``1.1.1-0``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.3-0`` .. raw:: html
:depends biopython: :depends cython: :depends htslib: ``1.9.*`` :depends joblib: :depends keras: ``2.2.4.*`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends matplotlib-base: :depends muscle: ``3.8.1551.*`` :depends networkx: ``1.11.*`` :depends numpy: ``>=1.16.5,<2.0a0`` :depends pysam: ``0.15.1.*`` :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :depends scikit-learn: :depends scipy: ``>=1.2.1,<2.0a0`` :depends tensorflow: ``1.13.1.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install advntr and update with:: mamba update advntr To create a new environment, run:: mamba create --name myenvname advntr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/advntr: (see `advntr/tags`_ for valid values for ````) .. |downloads_advntr| image:: https://img.shields.io/conda/dn/bioconda/advntr.svg?style=flat :target: https://anaconda.org/bioconda/advntr :alt: (downloads) .. |docker_advntr| image:: https://quay.io/repository/biocontainers/advntr/status :target: https://quay.io/repository/biocontainers/advntr .. _`advntr/tags`: https://quay.io/repository/biocontainers/advntr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/advntr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/advntr/README.html