:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'alder' .. highlight: bash alder ===== .. conda:recipe:: alder :replaces_section_title: :noindex: The ALDER software computes the weighted linkage disequilibrium \(LD\) statistic for making inference about population admixture :homepage: http://cb.csail.mit.edu/cb/alder/ :license: Custom OSS :recipe: /`alder `_/`meta.yaml `_ :links: biotools: :biotools:`alder`, doi: :doi:`10.1534/genetics.112.147330` .. conda:package:: alder |downloads_alder| |docker_alder| :versions: ``1.03-6``,  ``1.03-5``,  ``1.03-4``,  ``1.03-3``,  ``1.03-2``,  ``1.03-1``,  ``1.03-0`` :depends _openmp_mutex: ``>=4.5`` :depends fftw: ``>=3.3.10,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install alder and update with:: mamba update alder To create a new environment, run:: mamba create --name myenvname alder with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/alder: (see `alder/tags`_ for valid values for ````) .. |downloads_alder| image:: https://img.shields.io/conda/dn/bioconda/alder.svg?style=flat :target: https://anaconda.org/bioconda/alder :alt: (downloads) .. |docker_alder| image:: https://quay.io/repository/biocontainers/alder/status :target: https://quay.io/repository/biocontainers/alder .. _`alder/tags`: https://quay.io/repository/biocontainers/alder?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/alder/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/alder/README.html