:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'anise_basil'
.. highlight: bash

anise_basil
===========

.. conda:recipe:: anise_basil
   :replaces_section_title:
   :noindex:

   BASIL is a method to detect breakpoints for structural variants \(including insertion breakpoints\) from aligned paired HTS reads in BAM format. ANISE is a method for the assembly of large insertions from paired reads in BAM format and a list candidate insert breakpoints as generated by BASIL.

   :homepage: https://github.com/seqan/anise_basil
   :license: BSD
   :recipe: /`anise_basil <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/anise_basil>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/anise_basil/meta.yaml>`_
   :links: doi: :doi:`10.1093/bioinformatics/btv051`

   


.. conda:package:: anise_basil

   |downloads_anise_basil| |docker_anise_basil|

   :versions:
      
      

      ``1.2.0-7``,  ``1.2.0-6``,  ``1.2.0-4``,  ``1.2.0-3``,  ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0``

      

   
   :depends libgcc-ng: ``>=12``
   :depends libstdcxx-ng: ``>=12``
   :depends libzlib: ``>=1.2.13,<1.3.0a0``
   :depends python: ``>=3.10,<3.11.0a0``
   :depends python_abi: ``3.10.* *_cp310``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install anise_basil

   and update with::

      mamba update anise_basil

  To create a new environment, run::

      mamba create --name myenvname anise_basil

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/anise_basil:<tag>

   (see `anise_basil/tags`_ for valid values for ``<tag>``)


.. |downloads_anise_basil| image:: https://img.shields.io/conda/dn/bioconda/anise_basil.svg?style=flat
   :target: https://anaconda.org/bioconda/anise_basil
   :alt:   (downloads)
.. |docker_anise_basil| image:: https://quay.io/repository/biocontainers/anise_basil/status
   :target: https://quay.io/repository/biocontainers/anise_basil
.. _`anise_basil/tags`: https://quay.io/repository/biocontainers/anise_basil?tab=tags


.. raw:: html

    <script>
        var package = "anise_basil";
        var versions = ["1.2.0","1.2.0","1.2.0","1.2.0","1.2.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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