:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'antismash' .. highlight: bash antismash ========= .. conda:recipe:: antismash :replaces_section_title: :noindex: antiSMASH \- the antibiotics and Secondary Metabolite Analysis SHell :homepage: https://docs.antismash.secondarymetabolites.org/intro/ :documentation: https://docs.antismash.secondarymetabolites.org :developer docs: https://github.com/antismash/antismash :license: AGPL / AGPL-3.0-or-later :recipe: /`antismash `_/`meta.yaml `_ :links: biotools: :biotools:`antismash`, doi: :doi:`10.1093/nar/gkr466`, doi: :doi:`10.1093/nar/gkt449`, doi: :doi:`10.1093/nar/gkv437`, doi: :doi:`10.1093/nar/gkx319`, doi: :doi:`10.1093/nar/gkz310`, doi: :doi:`10.1093/nar/gkab335`, doi: :doi:`10.1093/nar/gkad344`, usegalaxy-eu: :usegalaxy-eu:`antismash` antiSMASH allows the rapid genome\-wide identification\, annotation and analysis of secondary metabolite biosynthesis gene clusters. .. conda:package:: antismash |downloads_antismash| |docker_antismash| :versions: .. raw:: html
7.1.0-06.1.1-06.1.0-06.0.1-06.0.0-05.1.2-45.1.2-35.1.2-25.1.2-1 ``7.1.0-0``,  ``6.1.1-0``,  ``6.1.0-0``,  ``6.0.1-0``,  ``6.0.0-0``,  ``5.1.2-4``,  ``5.1.2-3``,  ``5.1.2-2``,  ``5.1.2-1``,  ``5.1.2-0``,  ``5.1.1-0``,  ``4.2.0-2``,  ``4.2.0-1``,  ``4.1.0-1``,  ``4.1.0-0``,  ``4.0.2-3``,  ``4.0.2-2``,  ``4.0.2-1``,  ``4.0.1-1`` .. raw:: html
:depends bcbio-gff: :depends biopython: ``1.78.*`` :depends blast: :depends brawn: ``>=1.0.1`` :depends diamond: :depends fasttree: ``2.1.*`` :depends glimmerhmm: ``3.0.*`` :depends helperlibs: ``>=0.2.1`` :depends hmmer: ``>=3.1b2`` :depends hmmer2: :depends jinja2: :depends joblib: :depends jsonschema: :depends libsass: :depends markupsafe: ``>=2.0`` :depends matplotlib-base: :depends meme: ``4.11.2.*`` :depends moods: ``>=1.9.4.2`` :depends nrpys: ``>=0.1.1`` :depends numpy: :depends prodigal: :depends pysvg-py3: :depends python: ``>=3.9`` :depends scikit-learn: ``>=1.3.2`` :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install antismash and update with:: mamba update antismash To create a new environment, run:: mamba create --name myenvname antismash with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/antismash: (see `antismash/tags`_ for valid values for ````) .. |downloads_antismash| image:: https://img.shields.io/conda/dn/bioconda/antismash.svg?style=flat :target: https://anaconda.org/bioconda/antismash :alt: (downloads) .. |docker_antismash| image:: https://quay.io/repository/biocontainers/antismash/status :target: https://quay.io/repository/biocontainers/antismash .. _`antismash/tags`: https://quay.io/repository/biocontainers/antismash?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/antismash/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/antismash/README.html