:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'athena_meta' .. highlight: bash athena_meta =========== .. conda:recipe:: athena_meta :replaces_section_title: :noindex: Athena read cloud assembler for metagenomes :homepage: https://github.com/abishara/athena_meta/ :license: MIT :recipe: /`athena_meta `_/`meta.yaml `_ .. conda:package:: athena_meta |downloads_athena_meta| |docker_athena_meta| :versions: ``1.3-1``,  ``1.3-0``,  ``1.2-0`` :depends bwa: ``0.7.*`` :depends bx-python: ``0.8.*`` :depends flye: ``2.3.1.*`` :depends htslib: ``1.9.*`` :depends idba_subasm: ``1.1.3a1.*`` :depends ipython-cluster-helper: ``0.6.*`` :depends numpy: ``1.11.*`` :depends pysam: ``0.15.*`` :depends python: ``<3`` :depends samtools: ``1.9.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install athena_meta and update with:: mamba update athena_meta To create a new environment, run:: mamba create --name myenvname athena_meta with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/athena_meta: (see `athena_meta/tags`_ for valid values for ````) .. |downloads_athena_meta| image:: https://img.shields.io/conda/dn/bioconda/athena_meta.svg?style=flat :target: https://anaconda.org/bioconda/athena_meta :alt: (downloads) .. |docker_athena_meta| image:: https://quay.io/repository/biocontainers/athena_meta/status :target: https://quay.io/repository/biocontainers/athena_meta .. _`athena_meta/tags`: https://quay.io/repository/biocontainers/athena_meta?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/athena_meta/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/athena_meta/README.html