:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bamsnap' .. highlight: bash bamsnap ======= .. conda:recipe:: bamsnap :replaces_section_title: :noindex: A converter from .bam to .png for specific genomic region. :homepage: https://github.com/parklab/bamsnap :license: MIT / MIT :recipe: /`bamsnap `_/`meta.yaml `_ .. conda:package:: bamsnap |downloads_bamsnap| |docker_bamsnap| :versions: ``0.2.19-0``,  ``0.2.18-0``,  ``0.2.17-0`` :depends pillow: ``>=2.0.0`` :depends pyfaidx: ``>=0.5.3.1`` :depends pysam: ``>=0.15.0`` :depends pytabix: ``>=0.0.2`` :depends python: ``>=3.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bamsnap and update with:: mamba update bamsnap To create a new environment, run:: mamba create --name myenvname bamsnap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bamsnap: (see `bamsnap/tags`_ for valid values for ````) .. |downloads_bamsnap| image:: https://img.shields.io/conda/dn/bioconda/bamsnap.svg?style=flat :target: https://anaconda.org/bioconda/bamsnap :alt: (downloads) .. |docker_bamsnap| image:: https://quay.io/repository/biocontainers/bamsnap/status :target: https://quay.io/repository/biocontainers/bamsnap .. _`bamsnap/tags`: https://quay.io/repository/biocontainers/bamsnap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bamsnap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bamsnap/README.html