:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bandage' .. highlight: bash bandage ======= .. conda:recipe:: bandage :replaces_section_title: :noindex: Bandage \- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily :homepage: https://github.com/rrwick/Bandage :license: GPL3 / GNU General Public License, version 3 :recipe: /`bandage `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/btv383` .. conda:package:: bandage |downloads_bandage| |docker_bandage| :versions: ``0.8.1-2``,  ``0.8.1-1``,  ``0.8.1-0`` :depends fonts-conda-ecosystem: :depends libgcc-ng: ``>=7.3.0`` :depends libstdcxx-ng: ``>=7.3.0`` :depends qt: ``>=5.12.5`` :depends xorg-libxrender: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bandage and update with:: mamba update bandage To create a new environment, run:: mamba create --name myenvname bandage with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bandage: (see `bandage/tags`_ for valid values for ````) .. |downloads_bandage| image:: https://img.shields.io/conda/dn/bioconda/bandage.svg?style=flat :target: https://anaconda.org/bioconda/bandage :alt: (downloads) .. |docker_bandage| image:: https://quay.io/repository/biocontainers/bandage/status :target: https://quay.io/repository/biocontainers/bandage .. _`bandage/tags`: https://quay.io/repository/biocontainers/bandage?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bandage/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bandage/README.html