:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bbknn' .. highlight: bash bbknn ===== .. conda:recipe:: bbknn :replaces_section_title: :noindex: Batch balanced KNN :homepage: https://github.com/Teichlab/bbknn :license: MIT / MIT :recipe: /`bbknn `_/`meta.yaml `_ .. conda:package:: bbknn |downloads_bbknn| |docker_bbknn| :versions: .. raw:: html
1.6.0-01.5.1-21.5.1-11.5.1-01.4.1-01.4.0-01.3.12-11.3.12-01.3.9-1 ``1.6.0-0``,  ``1.5.1-2``,  ``1.5.1-1``,  ``1.5.1-0``,  ``1.4.1-0``,  ``1.4.0-0``,  ``1.3.12-1``,  ``1.3.12-0``,  ``1.3.9-1``,  ``1.3.9-0``,  ``1.3.8-0``,  ``1.3.7-0``,  ``1.3.6-0``,  ``1.3.5-0``,  ``1.3.3-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends numpy: ``>=1.13`` :depends numpy: ``>=1.26.2,<2.0a0`` :depends pandas: :depends pynndescent: :depends python: ``>=3.10,<3.11.0a0`` :depends python-annoy: :depends python_abi: ``3.10.* *_cp310`` :depends scikit-learn: ``>=1.0.2`` :depends scipy: ``>=1.6.0`` :depends umap-learn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bbknn and update with:: mamba update bbknn To create a new environment, run:: mamba create --name myenvname bbknn with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bbknn: (see `bbknn/tags`_ for valid values for ````) .. |downloads_bbknn| image:: https://img.shields.io/conda/dn/bioconda/bbknn.svg?style=flat :target: https://anaconda.org/bioconda/bbknn :alt: (downloads) .. |docker_bbknn| image:: https://quay.io/repository/biocontainers/bbknn/status :target: https://quay.io/repository/biocontainers/bbknn .. _`bbknn/tags`: https://quay.io/repository/biocontainers/bbknn?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bbknn/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bbknn/README.html