:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bcbio_monitor' .. highlight: bash bcbio_monitor ============= .. conda:recipe:: bcbio_monitor :replaces_section_title: :noindex: bcbio\-monitor is an extension of bcbio\-nextgen to visualize its progress :homepage: https://github.com/guillermo-carrasco/bcbio-nextgen-monitor :license: MIT :recipe: /`bcbio_monitor `_/`meta.yaml `_ .. conda:package:: bcbio_monitor |downloads_bcbio_monitor| |docker_bcbio_monitor| :versions: ``1.0.6-4``,  ``1.0.6-3``,  ``1.0.6-2``,  ``1.0.6-0``,  ``1.0.2-0`` :depends dateutil: :depends flask: ``>=0.10.1`` :depends gevent: ``>=1.0,<1.2`` :depends paramiko: :depends python: ``<3`` :depends python-graphviz: :depends pytz: :depends pyyaml: :depends requests: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bcbio_monitor and update with:: mamba update bcbio_monitor To create a new environment, run:: mamba create --name myenvname bcbio_monitor with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bcbio_monitor: (see `bcbio_monitor/tags`_ for valid values for ````) .. |downloads_bcbio_monitor| image:: https://img.shields.io/conda/dn/bioconda/bcbio_monitor.svg?style=flat :target: https://anaconda.org/bioconda/bcbio_monitor :alt: (downloads) .. |docker_bcbio_monitor| image:: https://quay.io/repository/biocontainers/bcbio_monitor/status :target: https://quay.io/repository/biocontainers/bcbio_monitor .. _`bcbio_monitor/tags`: https://quay.io/repository/biocontainers/bcbio_monitor?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bcbio_monitor/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bcbio_monitor/README.html