:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bcbreport' .. highlight: bash bcbreport ========= .. conda:recipe:: bcbreport :replaces_section_title: :noindex: Rmd templates for bcbio\-nextgen analysis :homepage: https://github.com/lpantano/bcbio.coverage :license: MIT License :recipe: /`bcbreport `_/`meta.yaml `_ .. conda:package:: bcbreport |downloads_bcbreport| |docker_bcbreport| :versions: .. raw:: html
0.99.29-20.99.29-10.99.29-00.99.28-00.99.27-00.99.26-00.99.25-00.99.24-00.99.23-1 ``0.99.29-2``,  ``0.99.29-1``,  ``0.99.29-0``,  ``0.99.28-0``,  ``0.99.27-0``,  ``0.99.26-0``,  ``0.99.25-0``,  ``0.99.24-0``,  ``0.99.23-1``,  ``0.99.22-1``,  ``0.99.21-1``,  ``0.99.20-1``,  ``0.99.20-0`` .. raw:: html
:depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bcbreport and update with:: mamba update bcbreport To create a new environment, run:: mamba create --name myenvname bcbreport with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bcbreport: (see `bcbreport/tags`_ for valid values for ````) .. |downloads_bcbreport| image:: https://img.shields.io/conda/dn/bioconda/bcbreport.svg?style=flat :target: https://anaconda.org/bioconda/bcbreport :alt: (downloads) .. |docker_bcbreport| image:: https://quay.io/repository/biocontainers/bcbreport/status :target: https://quay.io/repository/biocontainers/bcbreport .. _`bcbreport/tags`: https://quay.io/repository/biocontainers/bcbreport?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bcbreport/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bcbreport/README.html