:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bigscape' .. highlight: bash bigscape ======== .. conda:recipe:: bigscape :replaces_section_title: :noindex: Biosynthetic Genes Similarity Clustering and Prospecting Engine. :homepage: https://github.com/medema-group/BiG-SCAPE :documentation: https://github.com/medema-group/BiG-SCAPE/wiki :license: AGPL-3.0-or-later :recipe: /`bigscape `_/`meta.yaml `_ :links: doi: :doi:`10.1038/s41589-019-0400-9` .. conda:package:: bigscape |downloads_bigscape| |docker_bigscape| :versions: ``1.1.9-0``,  ``1.1.8-0``,  ``1.1.6-0``,  ``1.1.5-0``,  ``1.1.4-1``,  ``1.1.4-0``,  ``1.1.3-0`` :depends biopython: :depends fasttree: :depends hmmer: :depends networkx: :depends numpy: :depends python: ``3.7`` :depends scikit-learn: :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bigscape and update with:: mamba update bigscape To create a new environment, run:: mamba create --name myenvname bigscape with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bigscape: (see `bigscape/tags`_ for valid values for ````) .. |downloads_bigscape| image:: https://img.shields.io/conda/dn/bioconda/bigscape.svg?style=flat :target: https://anaconda.org/bioconda/bigscape :alt: (downloads) .. |docker_bigscape| image:: https://quay.io/repository/biocontainers/bigscape/status :target: https://quay.io/repository/biocontainers/bigscape .. _`bigscape/tags`: https://quay.io/repository/biocontainers/bigscape?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bigscape/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bigscape/README.html