:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-acme'
.. highlight: bash

bioconductor-acme
=================

.. conda:recipe:: bioconductor-acme
   :replaces_section_title:
   :noindex:

   Algorithms for Calculating Microarray Enrichment \(ACME\)

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/ACME.html
   :license: GPL (>= 2)
   :recipe: /`bioconductor-acme <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-acme>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-acme/meta.yaml>`_
   :links: biotools: :biotools:`acme`

   ACME \(Algorithms for Calculating Microarray Enrichment\) is a set of tools for analysing tiling array ChIP\/chip\, DNAse hypersensitivity\, or other experiments that result in regions of the genome showing \"enrichment\".  It does not rely on a specific array technology \(although the array should be a \"tiling\" array\)\, is very general \(can be applied in experiments resulting in regions of enrichment\)\, and is very insensitive to array noise or normalization methods.  It is also very fast and can be applied on whole\-genome tiling array experiments quite easily with enough memory.


.. conda:package:: bioconductor-acme

   |downloads_bioconductor-acme| |docker_bioconductor-acme|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>2.58.0-0</code>,  <code>2.56.0-0</code>,  <code>2.54.0-1</code>,  <code>2.54.0-0</code>,  <code>2.50.0-2</code>,  <code>2.50.0-1</code>,  <code>2.50.0-0</code>,  <code>2.48.0-0</code>,  <code>2.46.0-1</code>,  </span></summary>
      

      ``2.58.0-0``,  ``2.56.0-0``,  ``2.54.0-1``,  ``2.54.0-0``,  ``2.50.0-2``,  ``2.50.0-1``,  ``2.50.0-0``,  ``2.48.0-0``,  ``2.46.0-1``,  ``2.46.0-0``,  ``2.44.0-0``,  ``2.42.0-0``,  ``2.40.0-1``,  ``2.38.0-0``,  ``2.36.0-0``,  ``2.34.0-0``,  ``2.32.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0``
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0``
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-biocgenerics: ``>=0.48.1,<0.49.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-acme

   and update with::

      mamba update bioconductor-acme

  To create a new environment, run::

      mamba create --name myenvname bioconductor-acme

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-acme:<tag>

   (see `bioconductor-acme/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-acme| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-acme.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-acme
   :alt:   (downloads)
.. |docker_bioconductor-acme| image:: https://quay.io/repository/biocontainers/bioconductor-acme/status
   :target: https://quay.io/repository/biocontainers/bioconductor-acme
.. _`bioconductor-acme/tags`: https://quay.io/repository/biocontainers/bioconductor-acme?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-acme";
        var versions = ["2.58.0","2.56.0","2.54.0","2.54.0","2.50.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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