:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-ahmeshdbs' .. highlight: bash bioconductor-ahmeshdbs ====================== .. conda:recipe:: bioconductor-ahmeshdbs :replaces_section_title: :noindex: MeSHDbs for AnnotationHub :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/AHMeSHDbs.html :license: Artistic-2.0 :recipe: /`bioconductor-ahmeshdbs `_/`meta.yaml `_ Supplies AnnotationHub with \`MeSHDb\` NIH MeSH annotation databases for many species. All the SQLite files and metadata.csv are generated by our Snakemake workflow \[mesh\-workflow\]\(https\:\/\/github.com\/rikenbit\/mesh\-workflow\). .. conda:package:: bioconductor-ahmeshdbs |downloads_bioconductor-ahmeshdbs| |docker_bioconductor-ahmeshdbs| :versions: ``1.7.0-0``,  ``1.6.0-0``,  ``1.5.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``0.99.6-0`` :depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-ahmeshdbs and update with:: mamba update bioconductor-ahmeshdbs To create a new environment, run:: mamba create --name myenvname bioconductor-ahmeshdbs with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-ahmeshdbs: (see `bioconductor-ahmeshdbs/tags`_ for valid values for ````) .. |downloads_bioconductor-ahmeshdbs| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-ahmeshdbs.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-ahmeshdbs :alt: (downloads) .. |docker_bioconductor-ahmeshdbs| image:: https://quay.io/repository/biocontainers/bioconductor-ahmeshdbs/status :target: https://quay.io/repository/biocontainers/bioconductor-ahmeshdbs .. _`bioconductor-ahmeshdbs/tags`: https://quay.io/repository/biocontainers/bioconductor-ahmeshdbs?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ahmeshdbs/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-ahmeshdbs/README.html