:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-alabaster.files'
.. highlight: bash

bioconductor-alabaster.files
============================

.. conda:recipe:: bioconductor-alabaster.files
   :replaces_section_title:
   :noindex:

   Wrappers to Save Common File Formats

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/alabaster.files.html
   :license: MIT + file LICENSE
   :recipe: /`bioconductor-alabaster.files <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-alabaster.files>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-alabaster.files/meta.yaml>`_

   Save common bioinformatics file formats within the alabaster framework. This includes BAM\, BED\, VCF\, bigWig\, bigBed\, FASTQ\, FASTA and so on. We save and load additional metadata for each file\, and we support linkage between each file and its corresponding index.


.. conda:package:: bioconductor-alabaster.files

   |downloads_bioconductor-alabaster.files| |docker_bioconductor-alabaster.files|

   :versions:
      
      

      ``1.0.0-0``

      

   
   :depends bioconductor-alabaster.base: ``>=1.2.0,<1.3.0``
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0``
   :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0``
   :depends bioconductor-rtracklayer: ``>=1.62.0,<1.63.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-alabaster.files

   and update with::

      mamba update bioconductor-alabaster.files

  To create a new environment, run::

      mamba create --name myenvname bioconductor-alabaster.files

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-alabaster.files:<tag>

   (see `bioconductor-alabaster.files/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-alabaster.files| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-alabaster.files.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-alabaster.files
   :alt:   (downloads)
.. |docker_bioconductor-alabaster.files| image:: https://quay.io/repository/biocontainers/bioconductor-alabaster.files/status
   :target: https://quay.io/repository/biocontainers/bioconductor-alabaster.files
.. _`bioconductor-alabaster.files/tags`: https://quay.io/repository/biocontainers/bioconductor-alabaster.files?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-alabaster.files";
        var versions = ["1.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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