:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-apcomplex' .. highlight: bash bioconductor-apcomplex ====================== .. conda:recipe:: bioconductor-apcomplex :replaces_section_title: :noindex: Estimate protein complex membership using AP\-MS protein data :homepage: https://bioconductor.org/packages/3.18/bioc/html/apComplex.html :license: LGPL :recipe: /`bioconductor-apcomplex `_/`meta.yaml `_ :links: biotools: :biotools:`apcomplex`, doi: :doi:`10.1093/bioinformatics/bti567` Functions to estimate a bipartite graph of protein complex membership using AP\-MS data. .. conda:package:: bioconductor-apcomplex |downloads_bioconductor-apcomplex| |docker_bioconductor-apcomplex| :versions: .. raw:: html
2.68.0-02.66.0-02.64.0-02.60.0-02.58.0-02.56.0-12.56.0-02.54.0-02.52.0-0 ``2.68.0-0``,  ``2.66.0-0``,  ``2.64.0-0``,  ``2.60.0-0``,  ``2.58.0-0``,  ``2.56.0-1``,  ``2.56.0-0``,  ``2.54.0-0``,  ``2.52.0-0``,  ``2.50.0-1``,  ``2.48.0-0``,  ``2.46.0-0``,  ``2.44.0-0`` .. raw:: html
:depends bioconductor-graph: ``>=1.80.0,<1.81.0`` :depends bioconductor-org.sc.sgd.db: ``>=3.18.0,<3.19.0`` :depends bioconductor-rbgl: ``>=1.78.0,<1.79.0`` :depends bioconductor-rgraphviz: ``>=2.46.0,<2.47.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-apcomplex and update with:: mamba update bioconductor-apcomplex To create a new environment, run:: mamba create --name myenvname bioconductor-apcomplex with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-apcomplex: (see `bioconductor-apcomplex/tags`_ for valid values for ````) .. |downloads_bioconductor-apcomplex| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-apcomplex.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-apcomplex :alt: (downloads) .. |docker_bioconductor-apcomplex| image:: https://quay.io/repository/biocontainers/bioconductor-apcomplex/status :target: https://quay.io/repository/biocontainers/bioconductor-apcomplex .. _`bioconductor-apcomplex/tags`: https://quay.io/repository/biocontainers/bioconductor-apcomplex?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-apcomplex/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-apcomplex/README.html