:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-arraymvout' .. highlight: bash bioconductor-arraymvout ======================= .. conda:recipe:: bioconductor-arraymvout :replaces_section_title: :noindex: multivariate outlier detection for expression array QA :homepage: https://bioconductor.org/packages/3.18/bioc/html/arrayMvout.html :license: Artistic-2.0 :recipe: /`bioconductor-arraymvout `_/`meta.yaml `_ This package supports the application of diverse quality metrics to AffyBatch instances\, summarizing these metrics via PCA\, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate .. conda:package:: bioconductor-arraymvout |downloads_bioconductor-arraymvout| |docker_bioconductor-arraymvout| :versions: .. raw:: html
1.60.0-01.58.0-01.56.0-01.52.0-01.50.0-01.48.0-11.48.0-01.46.0-01.44.0-0 ``1.60.0-0``,  ``1.58.0-0``,  ``1.56.0-0``,  ``1.52.0-0``,  ``1.50.0-0``,  ``1.48.0-1``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-0``,  ``1.42.0-1``,  ``1.40.0-0`` .. raw:: html
:depends bioconductor-affy: ``>=1.80.0,<1.81.0`` :depends bioconductor-affycontam: ``>=1.60.0,<1.61.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-lumi: ``>=2.54.0,<2.55.0`` :depends bioconductor-mdqc: ``>=1.64.0,<1.65.0`` :depends bioconductor-parody: ``>=1.60.0,<1.61.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-arraymvout and update with:: mamba update bioconductor-arraymvout To create a new environment, run:: mamba create --name myenvname bioconductor-arraymvout with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-arraymvout: (see `bioconductor-arraymvout/tags`_ for valid values for ````) .. |downloads_bioconductor-arraymvout| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-arraymvout.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-arraymvout :alt: (downloads) .. |docker_bioconductor-arraymvout| image:: https://quay.io/repository/biocontainers/bioconductor-arraymvout/status :target: https://quay.io/repository/biocontainers/bioconductor-arraymvout .. _`bioconductor-arraymvout/tags`: https://quay.io/repository/biocontainers/bioconductor-arraymvout?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-arraymvout/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-arraymvout/README.html