:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-attract' .. highlight: bash bioconductor-attract ==================== .. conda:recipe:: bioconductor-attract :replaces_section_title: :noindex: Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman\'s Attractor Landscape :homepage: https://bioconductor.org/packages/3.14/bioc/html/attract.html :license: LGPL (>= 2.0) :recipe: /`bioconductor-attract `_/`meta.yaml `_ This package contains the functions to find the gene expression modules that represent the drivers of Kauffman\'s attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups\, which show transcriptionally\-coordinated changes in gene expression. .. conda:package:: bioconductor-attract |downloads_bioconductor-attract| |docker_bioconductor-attract| :versions: ``1.46.0-0``,  ``1.44.0-0``,  ``1.42.0-1``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-1``,  ``1.34.0-0`` :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-gostats: ``>=2.60.0,<2.61.0`` :depends bioconductor-keggrest: ``>=1.34.0,<1.35.0`` :depends bioconductor-limma: ``>=3.50.0,<3.51.0`` :depends bioconductor-org.hs.eg.db: ``>=3.14.0,<3.15.0`` :depends bioconductor-reactome.db: ``>=1.77.0,<1.78.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-cluster: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-attract and update with:: conda update bioconductor-attract or use the docker container:: docker pull quay.io/biocontainers/bioconductor-attract: (see `bioconductor-attract/tags`_ for valid values for ````) .. |downloads_bioconductor-attract| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-attract.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-attract :alt: (downloads) .. |docker_bioconductor-attract| image:: https://quay.io/repository/biocontainers/bioconductor-attract/status :target: https://quay.io/repository/biocontainers/bioconductor-attract .. _`bioconductor-attract/tags`: https://quay.io/repository/biocontainers/bioconductor-attract?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-attract/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-attract/README.html