:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-bags' .. highlight: bash bioconductor-bags ================= .. conda:recipe:: bioconductor-bags :replaces_section_title: :noindex: A Bayesian Approach for Geneset Selection :homepage: https://bioconductor.org/packages/3.18/bioc/html/BAGS.html :license: Artistic-2.0 :recipe: /`bioconductor-bags `_/`meta.yaml `_ R package providing functions to perform geneset significance analysis over simple cross\-sectional data between 2 and 5 phenotypes of interest. .. conda:package:: bioconductor-bags |downloads_bioconductor-bags| |docker_bioconductor-bags| :versions: .. raw:: html
2.42.0-02.40.0-02.38.0-12.38.0-02.34.0-22.34.0-12.34.0-02.32.0-02.30.0-2 ``2.42.0-0``,  ``2.40.0-0``,  ``2.38.0-1``,  ``2.38.0-0``,  ``2.34.0-2``,  ``2.34.0-1``,  ``2.34.0-0``,  ``2.32.0-0``,  ``2.30.0-2``,  ``2.30.0-0``,  ``2.28.0-0``,  ``2.26.0-1``,  ``2.24.0-1``,  ``2.22.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0`` :depends bioconductor-breastcancervdx: ``>=1.40.0,<1.41.0`` :depends bioconductor-breastcancervdx: ``>=1.40.0,<1.41.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-bags and update with:: mamba update bioconductor-bags To create a new environment, run:: mamba create --name myenvname bioconductor-bags with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-bags: (see `bioconductor-bags/tags`_ for valid values for ````) .. |downloads_bioconductor-bags| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bags.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-bags :alt: (downloads) .. |docker_bioconductor-bags| image:: https://quay.io/repository/biocontainers/bioconductor-bags/status :target: https://quay.io/repository/biocontainers/bioconductor-bags .. _`bioconductor-bags/tags`: https://quay.io/repository/biocontainers/bioconductor-bags?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bags/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-bags/README.html