:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-banocc' .. highlight: bash bioconductor-banocc =================== .. conda:recipe:: bioconductor-banocc :replaces_section_title: :noindex: Bayesian ANalysis Of Compositional Covariance :homepage: https://bioconductor.org/packages/3.18/bioc/html/banocc.html :license: MIT + file LICENSE :recipe: /`bioconductor-banocc `_/`meta.yaml `_ BAnOCC is a package designed for compositional data\, where each sample sums to one. It infers the approximate covariance of the unconstrained data using a Bayesian model coded with \`rstan\`. It provides as output the \`stanfit\` object as well as posterior median and credible interval estimates for each correlation element. .. conda:package:: bioconductor-banocc |downloads_bioconductor-banocc| |docker_bioconductor-banocc| :versions: .. raw:: html
1.26.0-01.24.0-01.22.0-01.18.0-01.16.0-01.14.0-11.14.0-01.12.0-01.10.0-0 ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-coda: ``>=0.18.1`` :depends r-mvtnorm: :depends r-rstan: ``>=2.17.4`` :depends r-stringr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-banocc and update with:: mamba update bioconductor-banocc To create a new environment, run:: mamba create --name myenvname bioconductor-banocc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-banocc: (see `bioconductor-banocc/tags`_ for valid values for ````) .. |downloads_bioconductor-banocc| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-banocc.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-banocc :alt: (downloads) .. |docker_bioconductor-banocc| image:: https://quay.io/repository/biocontainers/bioconductor-banocc/status :target: https://quay.io/repository/biocontainers/bioconductor-banocc .. _`bioconductor-banocc/tags`: https://quay.io/repository/biocontainers/bioconductor-banocc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-banocc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-banocc/README.html