:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-biocpkgtools' .. highlight: bash bioconductor-biocpkgtools ========================= .. conda:recipe:: bioconductor-biocpkgtools :replaces_section_title: :noindex: Collection of simple tools for learning about Bioconductor Packages :homepage: https://bioconductor.org/packages/3.18/bioc/html/BiocPkgTools.html :license: MIT + file LICENSE :recipe: /`bioconductor-biocpkgtools `_/`meta.yaml `_ Bioconductor has a rich ecosystem of metadata around packages\, usage\, and build status. This package is a simple collection of functions to access that metadata from R. The goal is to expose metadata for data mining and value\-added functionality such as package searching\, text mining\, and analytics on packages. .. conda:package:: bioconductor-biocpkgtools |downloads_bioconductor-biocpkgtools| |docker_bioconductor-biocpkgtools| :versions: .. raw:: html
1.20.0-01.18.0-01.16.0-01.12.2-01.10.1-01.8.0-11.8.0-01.6.0-01.4.0-0 ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.12.2-0``,  ``1.10.1-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.0.2-0`` .. raw:: html
:depends bioconductor-biocfilecache: ``>=2.10.0,<2.11.0`` :depends bioconductor-biocviews: ``>=1.70.0,<1.71.0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0`` :depends bioconductor-rbgl: ``>=1.78.0,<1.79.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-biocmanager: :depends r-dplyr: :depends r-dt: :depends r-gh: :depends r-htmltools: :depends r-htmlwidgets: :depends r-httr: :depends r-igraph: :depends r-jsonlite: :depends r-magrittr: :depends r-readr: :depends r-rlang: :depends r-rorcid: :depends r-rvest: :depends r-stringr: :depends r-tibble: :depends r-xml2: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-biocpkgtools and update with:: mamba update bioconductor-biocpkgtools To create a new environment, run:: mamba create --name myenvname bioconductor-biocpkgtools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-biocpkgtools: (see `bioconductor-biocpkgtools/tags`_ for valid values for ````) .. |downloads_bioconductor-biocpkgtools| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-biocpkgtools.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-biocpkgtools :alt: (downloads) .. |docker_bioconductor-biocpkgtools| image:: https://quay.io/repository/biocontainers/bioconductor-biocpkgtools/status :target: https://quay.io/repository/biocontainers/bioconductor-biocpkgtools .. _`bioconductor-biocpkgtools/tags`: https://quay.io/repository/biocontainers/bioconductor-biocpkgtools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocpkgtools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-biocpkgtools/README.html