:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-branchpointer' .. highlight: bash bioconductor-branchpointer ========================== .. conda:recipe:: bioconductor-branchpointer :replaces_section_title: :noindex: Prediction of intronic splicing branchpoints :homepage: https://bioconductor.org/packages/3.12/bioc/html/branchpointer.html :license: BSD_3_clause + file LICENSE :recipe: /`bioconductor-branchpointer `_/`meta.yaml `_ Predicts branchpoint probability for sites in intronic branchpoint windows. Queries can be supplied as intronic regions\; or to evaluate the effects of mutations\, SNPs. .. conda:package:: bioconductor-branchpointer |downloads_bioconductor-branchpointer| |docker_bioconductor-branchpointer| :versions: ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.8.0-0`` :depends bioconductor-biomart: ``>=2.46.0,<2.47.0`` :depends bioconductor-biostrings: ``>=2.58.0,<2.59.0`` :depends bioconductor-bsgenome.hsapiens.ucsc.hg38: ``>=1.4.0,<1.5.0`` :depends bioconductor-genomeinfodb: ``>=1.26.0,<1.27.0`` :depends bioconductor-genomicranges: ``>=1.42.0,<1.43.0`` :depends bioconductor-iranges: ``>=2.24.0,<2.25.0`` :depends bioconductor-rtracklayer: ``>=1.50.0,<1.51.0`` :depends bioconductor-s4vectors: ``>=0.28.0,<0.29.0`` :depends r-base: ``>=4.0,<4.1.0a0`` :depends r-caret: :depends r-cowplot: :depends r-data.table: :depends r-gbm: :depends r-ggplot2: :depends r-kernlab: :depends r-plyr: :depends r-stringr: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-branchpointer and update with:: conda update bioconductor-branchpointer or use the docker container:: docker pull quay.io/biocontainers/bioconductor-branchpointer: (see `bioconductor-branchpointer/tags`_ for valid values for ````) .. |downloads_bioconductor-branchpointer| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-branchpointer.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-branchpointer :alt: (downloads) .. |docker_bioconductor-branchpointer| image:: https://quay.io/repository/biocontainers/bioconductor-branchpointer/status :target: https://quay.io/repository/biocontainers/bioconductor-branchpointer .. _`bioconductor-branchpointer/tags`: https://quay.io/repository/biocontainers/bioconductor-branchpointer?tab=tags Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-branchpointer/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-branchpointer/README.html