:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-bsgenome.athaliana.tair.tair9' .. highlight: bash bioconductor-bsgenome.athaliana.tair.tair9 ========================================== .. conda:recipe:: bioconductor-bsgenome.athaliana.tair.tair9 :replaces_section_title: :noindex: Full genome sequences for Arabidopsis thaliana \(TAIR9\) :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Athaliana.TAIR.TAIR9.html :license: Artistic-2.0 :recipe: /`bioconductor-bsgenome.athaliana.tair.tair9 `_/`meta.yaml `_ Full genome sequences for Arabidopsis thaliana as provided by TAIR \(TAIR9 Genome Release\) and stored in Biostrings objects. Note that TAIR10 is an \"annotation release\" based on the same genome assembly as TAIR9. .. conda:package:: bioconductor-bsgenome.athaliana.tair.tair9 |downloads_bioconductor-bsgenome.athaliana.tair.tair9| |docker_bioconductor-bsgenome.athaliana.tair.tair9| :versions: .. raw:: html
1.3.1000-121.3.1000-111.3.1000-101.3.1000-91.3.1000-81.3.1000-71.3.1000-61.3.1000-51.3.1000-4 ``1.3.1000-12``,  ``1.3.1000-11``,  ``1.3.1000-10``,  ``1.3.1000-9``,  ``1.3.1000-8``,  ``1.3.1000-7``,  ``1.3.1000-6``,  ``1.3.1000-5``,  ``1.3.1000-4``,  ``1.3.1000-3``,  ``1.3.1000-2``,  ``1.3.1000-0`` .. raw:: html
:depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-bsgenome.athaliana.tair.tair9 and update with:: mamba update bioconductor-bsgenome.athaliana.tair.tair9 To create a new environment, run:: mamba create --name myenvname bioconductor-bsgenome.athaliana.tair.tair9 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-bsgenome.athaliana.tair.tair9: (see `bioconductor-bsgenome.athaliana.tair.tair9/tags`_ for valid values for ````) .. |downloads_bioconductor-bsgenome.athaliana.tair.tair9| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bsgenome.athaliana.tair.tair9.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-bsgenome.athaliana.tair.tair9 :alt: (downloads) .. |docker_bioconductor-bsgenome.athaliana.tair.tair9| image:: https://quay.io/repository/biocontainers/bioconductor-bsgenome.athaliana.tair.tair9/status :target: https://quay.io/repository/biocontainers/bioconductor-bsgenome.athaliana.tair.tair9 .. _`bioconductor-bsgenome.athaliana.tair.tair9/tags`: https://quay.io/repository/biocontainers/bioconductor-bsgenome.athaliana.tair.tair9?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome.athaliana.tair.tair9/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-bsgenome.athaliana.tair.tair9/README.html