:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-bsgenome.hsapiens.ucsc.hg38' .. highlight: bash bioconductor-bsgenome.hsapiens.ucsc.hg38 ======================================== .. conda:recipe:: bioconductor-bsgenome.hsapiens.ucsc.hg38 :replaces_section_title: :noindex: Full genomic sequences for Homo sapiens \(UCSC genome hg38\) :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Hsapiens.UCSC.hg38.html :license: Artistic-2.0 :recipe: /`bioconductor-bsgenome.hsapiens.ucsc.hg38 `_/`meta.yaml `_ Full genomic sequences for Homo sapiens as provided by UCSC \(genome hg38\, based on assembly GRCh38.p14 since 2023\/01\/31\). The sequences are stored in DNAString objects. .. conda:package:: bioconductor-bsgenome.hsapiens.ucsc.hg38 |downloads_bioconductor-bsgenome.hsapiens.ucsc.hg38| |docker_bioconductor-bsgenome.hsapiens.ucsc.hg38| :versions: .. raw:: html
1.4.5-21.4.5-11.4.5-01.4.4-21.4.4-11.4.4-01.4.3-31.4.3-21.4.3-1 ``1.4.5-2``,  ``1.4.5-1``,  ``1.4.5-0``,  ``1.4.4-2``,  ``1.4.4-1``,  ``1.4.4-0``,  ``1.4.3-3``,  ``1.4.3-2``,  ``1.4.3-1``,  ``1.4.3-0``,  ``1.4.1-8``,  ``1.4.1-7``,  ``1.4.1-5``,  ``1.4.1-4``,  ``1.4.1-2``,  ``1.4.1-1``,  ``1.4.1-0`` .. raw:: html
:depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-bsgenome.hsapiens.ucsc.hg38 and update with:: mamba update bioconductor-bsgenome.hsapiens.ucsc.hg38 To create a new environment, run:: mamba create --name myenvname bioconductor-bsgenome.hsapiens.ucsc.hg38 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38: (see `bioconductor-bsgenome.hsapiens.ucsc.hg38/tags`_ for valid values for ````) .. |downloads_bioconductor-bsgenome.hsapiens.ucsc.hg38| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-bsgenome.hsapiens.ucsc.hg38.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-bsgenome.hsapiens.ucsc.hg38 :alt: (downloads) .. |docker_bioconductor-bsgenome.hsapiens.ucsc.hg38| image:: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38/status :target: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38 .. _`bioconductor-bsgenome.hsapiens.ucsc.hg38/tags`: https://quay.io/repository/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/README.html