:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-ccdata' .. highlight: bash bioconductor-ccdata =================== .. conda:recipe:: bioconductor-ccdata :replaces_section_title: :noindex: Data for Combination Connectivity Mapping \(ccmap\) Package :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/ccdata.html :license: MIT + file LICENSE :recipe: /`bioconductor-ccdata `_/`meta.yaml `_ This package contains microarray gene expression data generated from the Connectivity Map build 02 and LINCS l1000. The data are used by the ccmap package to find drugs and drug combinations to mimic or reverse a gene expression signature. .. conda:package:: bioconductor-ccdata |downloads_bioconductor-ccdata| |docker_bioconductor-ccdata| :versions: .. raw:: html
1.28.0-01.26.0-01.24.0-01.23.0-01.20.0-11.20.0-01.18.0-01.16.0-11.16.0-0 ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.23.0-0``,  ``1.20.0-1``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0`` .. raw:: html
:depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-ccdata and update with:: mamba update bioconductor-ccdata To create a new environment, run:: mamba create --name myenvname bioconductor-ccdata with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-ccdata: (see `bioconductor-ccdata/tags`_ for valid values for ````) .. |downloads_bioconductor-ccdata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-ccdata.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-ccdata :alt: (downloads) .. |docker_bioconductor-ccdata| image:: https://quay.io/repository/biocontainers/bioconductor-ccdata/status :target: https://quay.io/repository/biocontainers/bioconductor-ccdata .. _`bioconductor-ccdata/tags`: https://quay.io/repository/biocontainers/bioconductor-ccdata?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ccdata/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-ccdata/README.html