:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-cctutorial'
.. highlight: bash

bioconductor-cctutorial
=======================

.. conda:recipe:: bioconductor-cctutorial
   :replaces_section_title:
   :noindex:

   Data package for ChIP\-chip tutorial

   :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/ccTutorial.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-cctutorial <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cctutorial>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cctutorial/meta.yaml>`_

   This is a data package that accompanies a ChIP\-chip tutorial\, which has been published in PLoS Computational Biology. The data and source code in this package allow the reader to completely reproduce the steps in the tutorial.


.. conda:package:: bioconductor-cctutorial

   |downloads_bioconductor-cctutorial| |docker_bioconductor-cctutorial|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.40.0-0</code>,  <code>1.38.0-0</code>,  <code>1.36.0-0</code>,  <code>1.32.0-1</code>,  <code>1.32.0-0</code>,  <code>1.30.0-0</code>,  <code>1.28.0-1</code>,  <code>1.28.0-0</code>,  <code>1.26.0-0</code>,  </span></summary>
      

      ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.32.0-1``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.20.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-affy: ``>=1.80.0,<1.81.0``
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0``
   :depends bioconductor-data-packages: ``>=20231203``
   :depends bioconductor-ringo: ``>=1.66.0,<1.67.0``
   :depends bioconductor-topgo: ``>=2.54.0,<2.55.0``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-cctutorial

   and update with::

      mamba update bioconductor-cctutorial

  To create a new environment, run::

      mamba create --name myenvname bioconductor-cctutorial

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-cctutorial:<tag>

   (see `bioconductor-cctutorial/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-cctutorial| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cctutorial.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-cctutorial
   :alt:   (downloads)
.. |docker_bioconductor-cctutorial| image:: https://quay.io/repository/biocontainers/bioconductor-cctutorial/status
   :target: https://quay.io/repository/biocontainers/bioconductor-cctutorial
.. _`bioconductor-cctutorial/tags`: https://quay.io/repository/biocontainers/bioconductor-cctutorial?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-cctutorial";
        var versions = ["1.40.0","1.38.0","1.36.0","1.32.0","1.32.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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