:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-censcyt' .. highlight: bash bioconductor-censcyt ==================== .. conda:recipe:: bioconductor-censcyt :replaces_section_title: :noindex: Differential abundance analysis with a right censored covariate in high\-dimensional cytometry :homepage: https://bioconductor.org/packages/3.18/bioc/html/censcyt.html :license: MIT + file LICENSE :recipe: /`bioconductor-censcyt `_/`meta.yaml `_ Methods for differential abundance analysis in high\-dimensional cytometry data when a covariate is subject to right censoring \(e.g. survival time\) based on multiple imputation and generalized linear mixed models. .. conda:package:: bioconductor-censcyt |downloads_bioconductor-censcyt| |docker_bioconductor-censcyt| :versions: ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-diffcyt: ``>=1.22.0,<1.23.0`` :depends bioconductor-edger: ``>=4.0.0,<4.1.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-broom.mixed: :depends r-dirmult: :depends r-dplyr: :depends r-fitdistrplus: :depends r-lme4: :depends r-magrittr: :depends r-mass: :depends r-mice: :depends r-multcomp: :depends r-purrr: :depends r-rlang: :depends r-stringr: :depends r-survival: :depends r-tibble: :depends r-tidyr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-censcyt and update with:: mamba update bioconductor-censcyt To create a new environment, run:: mamba create --name myenvname bioconductor-censcyt with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-censcyt: (see `bioconductor-censcyt/tags`_ for valid values for ````) .. |downloads_bioconductor-censcyt| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-censcyt.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-censcyt :alt: (downloads) .. |docker_bioconductor-censcyt| image:: https://quay.io/repository/biocontainers/bioconductor-censcyt/status :target: https://quay.io/repository/biocontainers/bioconductor-censcyt .. _`bioconductor-censcyt/tags`: https://quay.io/repository/biocontainers/bioconductor-censcyt?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-censcyt/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-censcyt/README.html