:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-cghmcr' .. highlight: bash bioconductor-cghmcr =================== .. conda:recipe:: bioconductor-cghmcr :replaces_section_title: :noindex: Find chromosome regions showing common gains\/losses :homepage: https://bioconductor.org/packages/3.18/bioc/html/cghMCR.html :license: LGPL :recipe: /`bioconductor-cghmcr `_/`meta.yaml `_ :links: biotools: :biotools:`cghmcr`, doi: :doi:`10.1093/bioinformatics/btv298` This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples. .. conda:package:: bioconductor-cghmcr |downloads_bioconductor-cghmcr| |docker_bioconductor-cghmcr| :versions: .. raw:: html
1.60.0-01.58.0-01.56.0-01.52.0-01.50.0-01.48.0-11.48.0-01.46.0-01.44.0-0 ``1.60.0-0``,  ``1.58.0-0``,  ``1.56.0-0``,  ``1.52.0-0``,  ``1.50.0-0``,  ``1.48.0-1``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-0``,  ``1.42.0-1``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-0`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-cntools: ``>=1.58.0,<1.59.0`` :depends bioconductor-dnacopy: ``>=1.76.0,<1.77.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-cghmcr and update with:: mamba update bioconductor-cghmcr To create a new environment, run:: mamba create --name myenvname bioconductor-cghmcr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-cghmcr: (see `bioconductor-cghmcr/tags`_ for valid values for ````) .. |downloads_bioconductor-cghmcr| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cghmcr.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-cghmcr :alt: (downloads) .. |docker_bioconductor-cghmcr| image:: https://quay.io/repository/biocontainers/bioconductor-cghmcr/status :target: https://quay.io/repository/biocontainers/bioconductor-cghmcr .. _`bioconductor-cghmcr/tags`: https://quay.io/repository/biocontainers/bioconductor-cghmcr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cghmcr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-cghmcr/README.html