:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-chipexoqual' .. highlight: bash bioconductor-chipexoqual ======================== .. conda:recipe:: bioconductor-chipexoqual :replaces_section_title: :noindex: ChIPexoQual :homepage: https://bioconductor.org/packages/3.18/bioc/html/ChIPexoQual.html :license: GPL (>=2) :recipe: /`bioconductor-chipexoqual `_/`meta.yaml `_ Package with a quality control pipeline for ChIP\-exo\/nexus data. .. conda:package:: bioconductor-chipexoqual |downloads_bioconductor-chipexoqual| |docker_bioconductor-chipexoqual| :versions: .. raw:: html
1.26.0-01.24.0-01.22.0-01.18.0-01.16.0-01.14.0-11.14.0-01.12.0-01.10.0-0 ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.6.0-0`` .. raw:: html
:depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-biovizbase: ``>=1.50.0,<1.51.0`` :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomicalignments: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-broom: ``>=0.4`` :depends r-data.table: ``>=1.9.6`` :depends r-dplyr: ``>=0.5`` :depends r-ggplot2: ``>=1.0`` :depends r-hexbin: ``>=1.27`` :depends r-rcolorbrewer: ``>=1.1`` :depends r-rmarkdown: :depends r-scales: ``>=0.4.0`` :depends r-viridis: ``>=0.3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-chipexoqual and update with:: mamba update bioconductor-chipexoqual To create a new environment, run:: mamba create --name myenvname bioconductor-chipexoqual with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-chipexoqual: (see `bioconductor-chipexoqual/tags`_ for valid values for ````) .. |downloads_bioconductor-chipexoqual| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-chipexoqual.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-chipexoqual :alt: (downloads) .. |docker_bioconductor-chipexoqual| image:: https://quay.io/repository/biocontainers/bioconductor-chipexoqual/status :target: https://quay.io/repository/biocontainers/bioconductor-chipexoqual .. _`bioconductor-chipexoqual/tags`: https://quay.io/repository/biocontainers/bioconductor-chipexoqual?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipexoqual/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-chipexoqual/README.html