:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-chipexoqualexample' .. highlight: bash bioconductor-chipexoqualexample =============================== .. conda:recipe:: bioconductor-chipexoqualexample :replaces_section_title: :noindex: Example data for the ChIPexoQual package\, which implements a quality control pipeline for ChIP\-exo data :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/ChIPexoQualExample.html :license: GPL (>= 2) :recipe: /`bioconductor-chipexoqualexample `_/`meta.yaml `_ Data for the ChIPexoQual package\, consisting of \(3\) chromosome 1 aligned reads from a ChIP\-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome. .. conda:package:: bioconductor-chipexoqualexample |downloads_bioconductor-chipexoqualexample| |docker_bioconductor-chipexoqualexample| :versions: .. raw:: html
1.26.0-01.24.0-01.21.0-01.18.0-11.18.0-01.16.0-01.14.0-11.14.0-01.13.0-0 ``1.26.0-0``,  ``1.24.0-0``,  ``1.21.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.13.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0`` .. raw:: html
:depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-chipexoqualexample and update with:: mamba update bioconductor-chipexoqualexample To create a new environment, run:: mamba create --name myenvname bioconductor-chipexoqualexample with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-chipexoqualexample: (see `bioconductor-chipexoqualexample/tags`_ for valid values for ````) .. |downloads_bioconductor-chipexoqualexample| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-chipexoqualexample.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-chipexoqualexample :alt: (downloads) .. |docker_bioconductor-chipexoqualexample| image:: https://quay.io/repository/biocontainers/bioconductor-chipexoqualexample/status :target: https://quay.io/repository/biocontainers/bioconductor-chipexoqualexample .. _`bioconductor-chipexoqualexample/tags`: https://quay.io/repository/biocontainers/bioconductor-chipexoqualexample?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipexoqualexample/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-chipexoqualexample/README.html