:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-circrnaprofiler' .. highlight: bash bioconductor-circrnaprofiler ============================ .. conda:recipe:: bioconductor-circrnaprofiler :replaces_section_title: :noindex: circRNAprofiler\: An R\-Based Computational Framework for the Downstream Analysis of Circular RNAs :homepage: https://bioconductor.org/packages/3.14/bioc/html/circRNAprofiler.html :license: GPL-3 :recipe: /`bioconductor-circrnaprofiler `_/`meta.yaml `_ R\-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation\-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis\, evolutionary conservation\, biogenesis to functional analysis. .. conda:package:: bioconductor-circrnaprofiler |downloads_bioconductor-circrnaprofiler| |docker_bioconductor-circrnaprofiler| :versions: ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.2-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-annotationhub: ``>=3.2.0,<3.3.0`` :depends bioconductor-biostrings: ``>=2.62.0,<2.63.0`` :depends bioconductor-bsgenome: ``>=1.62.0,<1.63.0`` :depends bioconductor-bsgenome.hsapiens.ucsc.hg19: ``>=1.4.0,<1.5.0`` :depends bioconductor-deseq2: ``>=1.34.0,<1.35.0`` :depends bioconductor-edger: ``>=3.36.0,<3.37.0`` :depends bioconductor-genomeinfodb: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-gwascat: ``>=2.26.0,<2.27.0`` :depends bioconductor-iranges: ``>=2.28.0,<2.29.0`` :depends bioconductor-rtracklayer: ``>=1.54.0,<1.55.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-universalmotif: ``>=1.12.0,<1.13.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-dplyr: :depends r-ggplot2: :depends r-magrittr: :depends r-r.utils: :depends r-readr: :depends r-reshape2: :depends r-rlang: :depends r-seqinr: :depends r-stringi: :depends r-stringr: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-circrnaprofiler and update with:: conda update bioconductor-circrnaprofiler or use the docker container:: docker pull quay.io/biocontainers/bioconductor-circrnaprofiler: (see `bioconductor-circrnaprofiler/tags`_ for valid values for ````) .. |downloads_bioconductor-circrnaprofiler| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-circrnaprofiler.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-circrnaprofiler :alt: (downloads) .. |docker_bioconductor-circrnaprofiler| image:: https://quay.io/repository/biocontainers/bioconductor-circrnaprofiler/status :target: https://quay.io/repository/biocontainers/bioconductor-circrnaprofiler .. _`bioconductor-circrnaprofiler/tags`: https://quay.io/repository/biocontainers/bioconductor-circrnaprofiler?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-circrnaprofiler/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-circrnaprofiler/README.html