:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-clomial' .. highlight: bash bioconductor-clomial ==================== .. conda:recipe:: bioconductor-clomial :replaces_section_title: :noindex: Infers clonal composition of a tumor :homepage: https://bioconductor.org/packages/3.18/bioc/html/Clomial.html :license: GPL (>= 2) :recipe: /`bioconductor-clomial `_/`meta.yaml `_ :links: biotools: :biotools:`clomial` Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor. .. conda:package:: bioconductor-clomial |downloads_bioconductor-clomial| |docker_bioconductor-clomial| :versions: .. raw:: html
1.38.0-11.38.0-01.36.0-01.34.0-01.30.0-01.28.0-01.26.0-11.26.0-01.24.0-0 ``1.38.0-1``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-1``,  ``1.20.0-0``,  ``1.18.1-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-matrixstats: :depends r-permute: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-clomial and update with:: mamba update bioconductor-clomial To create a new environment, run:: mamba create --name myenvname bioconductor-clomial with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-clomial: (see `bioconductor-clomial/tags`_ for valid values for ````) .. |downloads_bioconductor-clomial| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-clomial.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-clomial :alt: (downloads) .. |docker_bioconductor-clomial| image:: https://quay.io/repository/biocontainers/bioconductor-clomial/status :target: https://quay.io/repository/biocontainers/bioconductor-clomial .. _`bioconductor-clomial/tags`: https://quay.io/repository/biocontainers/bioconductor-clomial?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-clomial/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-clomial/README.html