:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-cner' .. highlight: bash bioconductor-cner ================= .. conda:recipe:: bioconductor-cner :replaces_section_title: :noindex: CNE Detection and Visualization :homepage: https://bioconductor.org/packages/3.14/bioc/html/CNEr.html :license: GPL-2 | file LICENSE :recipe: /`bioconductor-cner `_/`meta.yaml `_ :links: biotools: :biotools:`cner`, doi: :doi:`10.1038/nmeth.3252` Large\-scale identification and advanced visualization of sets of conserved noncoding elements. .. conda:package:: bioconductor-cner |downloads_bioconductor-cner| |docker_bioconductor-cner| :versions: .. raw:: html
1.30.0-11.30.0-01.28.0-01.26.0-11.26.0-01.24.0-01.22.0-01.20.0-11.18.1-0 ``1.30.0-1``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-1``,  ``1.18.1-0``,  ``1.16.1-0``,  ``1.14.0-0``,  ``1.12.1-0``,  ``1.10.2-0`` .. raw:: html
:depends bioconductor-annotate: ``>=1.72.0,<1.73.0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-biostrings: ``>=2.62.0,<2.63.0`` :depends bioconductor-genomeinfodb: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomicalignments: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-go.db: ``>=3.14.0,<3.15.0`` :depends bioconductor-iranges: ``>=2.28.0,<2.29.0`` :depends bioconductor-keggrest: ``>=1.34.0,<1.35.0`` :depends bioconductor-rtracklayer: ``>=1.54.0,<1.55.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-xvector: ``>=0.34.0,<0.35.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-dbi: ``>=0.7`` :depends r-ggplot2: ``>=2.1.0`` :depends r-powerlaw: ``>=0.60.3`` :depends r-r.utils: ``>=2.3.0`` :depends r-readr: ``>=0.2.2`` :depends r-reshape2: ``>=1.4.1`` :depends r-rsqlite: ``>=0.11.4`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-cner and update with:: conda update bioconductor-cner or use the docker container:: docker pull quay.io/biocontainers/bioconductor-cner: (see `bioconductor-cner/tags`_ for valid values for ````) .. |downloads_bioconductor-cner| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-cner.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-cner :alt: (downloads) .. |docker_bioconductor-cner| image:: https://quay.io/repository/biocontainers/bioconductor-cner/status :target: https://quay.io/repository/biocontainers/bioconductor-cner .. _`bioconductor-cner/tags`: https://quay.io/repository/biocontainers/bioconductor-cner?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cner/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-cner/README.html