:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-compcoder'
.. highlight: bash

bioconductor-compcoder
======================

.. conda:recipe:: bioconductor-compcoder
   :replaces_section_title:

   RNAseq data simulation\, differential expression analysis and performance comparison of differential expression methods

   :homepage: https://bioconductor.org/packages/3.10/bioc/html/compcodeR.html
   :license: GPL (>= 2)
   :recipe: /`bioconductor-compcoder <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-compcoder>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-compcoder/meta.yaml>`_

   This package provides extensive functionality for comparing results obtained by different methods for differential expression analysis of RNAseq data. It also contains functions for simulating count data and interfaces to several packages for performing the differential expression analysis.


.. conda:package:: bioconductor-compcoder

   |downloads_bioconductor-compcoder| |docker_bioconductor-compcoder|

   :versions: 1.22.0-0, 1.20.0-1, 1.20.0-0, 1.18.1-0, 1.18.0-0
   
   :depends bioconductor-edger: >=3.28.0,<3.29.0
   :depends bioconductor-limma: >=3.42.0,<3.43.0
   :depends r-base: >=3.6,<3.7.0a0
   :depends r-catools: 
   :depends r-gdata: 
   :depends r-ggplot2: 
   :depends r-gplots: 
   :depends r-gtools: 
   :depends r-kernsmooth: 
   :depends r-knitr: >=1.2
   :depends r-lattice: >=0.16
   :depends r-markdown: 
   :depends r-mass: 
   :depends r-modeest: 
   :depends r-rocr: 
   :depends r-sm: 
   :depends r-stringr: 
   :depends r-vioplot: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-compcoder

   and update with::

      conda update bioconductor-compcoder

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-compcoder:<tag>

   (see `bioconductor-compcoder/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-compcoder| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-compcoder.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-compcoder
   :alt:   (downloads)
.. |docker_bioconductor-compcoder| image:: https://quay.io/repository/biocontainers/bioconductor-compcoder/status
   :target: https://quay.io/repository/biocontainers/bioconductor-compcoder
.. _`bioconductor-compcoder/tags`: https://quay.io/repository/biocontainers/bioconductor-compcoder?tab=tags







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