:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-confess' .. highlight: bash bioconductor-confess ==================== .. conda:recipe:: bioconductor-confess :replaces_section_title: :noindex: Cell OrderiNg by FluorEScence Signal :homepage: https://bioconductor.org/packages/3.18/bioc/html/CONFESS.html :license: GPL-2 :recipe: /`bioconductor-confess `_/`meta.yaml `_ Single Cell Fluidigm Spot Detector. .. conda:package:: bioconductor-confess |downloads_bioconductor-confess| |docker_bioconductor-confess| :versions: .. raw:: html
1.30.0-01.28.0-01.26.0-01.22.0-01.20.0-01.18.0-11.18.0-01.16.0-01.14.0-0 ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.10.1-0`` .. raw:: html
:depends bioconductor-ebimage: ``>=4.44.0,<4.45.0`` :depends bioconductor-flowclust: ``>=3.40.0,<3.41.0`` :depends bioconductor-flowcore: ``>=2.14.0,<2.15.0`` :depends bioconductor-flowmeans: ``>=1.62.0,<1.63.0`` :depends bioconductor-flowmerge: ``>=2.50.0,<2.51.0`` :depends bioconductor-flowpeaks: ``>=1.48.0,<1.49.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-samspectral: ``>=1.56.0,<1.57.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-changepoint: :depends r-cluster: :depends r-contrast: :depends r-data.table: ``>=1.9.7`` :depends r-ecp: :depends r-flexmix: :depends r-foreach: :depends r-ggplot2: :depends r-mass: :depends r-moments: :depends r-outliers: :depends r-plotrix: :depends r-raster: :depends r-readbitmap: :depends r-reshape2: :depends r-waveslim: :depends r-wavethresh: :depends r-zoo: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-confess and update with:: mamba update bioconductor-confess To create a new environment, run:: mamba create --name myenvname bioconductor-confess with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-confess: (see `bioconductor-confess/tags`_ for valid values for ````) .. |downloads_bioconductor-confess| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-confess.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-confess :alt: (downloads) .. |docker_bioconductor-confess| image:: https://quay.io/repository/biocontainers/bioconductor-confess/status :target: https://quay.io/repository/biocontainers/bioconductor-confess .. _`bioconductor-confess/tags`: https://quay.io/repository/biocontainers/bioconductor-confess?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-confess/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-confess/README.html