:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-consensusde'
.. highlight: bash

bioconductor-consensusde
========================

.. conda:recipe:: bioconductor-consensusde
   :replaces_section_title:

   This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports \"Voom\"\, \"EdgeR\" and \"DESeq\". It uses RUV\-seq \(optional\) to remove batch effects.

   :homepage: https://bioconductor.org/packages/3.9/bioc/html/consensusDE.html
   :license: GPL-3
   :recipe: /`bioconductor-consensusde <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-consensusde>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-consensusde/meta.yaml>`_

   


.. conda:package:: bioconductor-consensusde

   |downloads_bioconductor-consensusde| |docker_bioconductor-consensusde|

   :versions: 1.0.0-0
   
   :depends bioconductor-airway: >=1.2.0,<1.3.0
   :depends bioconductor-annotationdbi: >=1.44.0,<1.45.0
   :depends bioconductor-biobase: >=2.42.0,<2.43.0
   :depends bioconductor-biocparallel: >=1.16.0,<1.17.0
   :depends bioconductor-biostrings: >=2.50.0,<2.51.0
   :depends bioconductor-deseq2: >=1.22.0,<1.23.0
   :depends bioconductor-edaseq: >=2.16.0,<2.17.0
   :depends bioconductor-edger: >=3.24.0,<3.25.0
   :depends bioconductor-genomicalignments: >=1.18.0,<1.19.0
   :depends bioconductor-genomicfeatures: >=1.34.0,<1.35.0
   :depends bioconductor-limma: >=3.38.0,<3.39.0
   :depends bioconductor-pcamethods: >=1.74.0,<1.75.0
   :depends bioconductor-rsamtools: >=1.34.0,<1.35.0
   :depends bioconductor-ruvseq: >=1.16.0,<1.17.0
   :depends bioconductor-s4vectors: >=0.20.0,<0.21.0
   :depends bioconductor-summarizedexperiment: >=1.12.0,<1.13.0
   :depends bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene: >=3.2.0,<3.3.0
   :depends r-base: >=3.5.1,<3.5.2.0a0
   :depends r-dendextend: 
   :depends r-rcolorbrewer: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-consensusde

   and update with::

      conda update bioconductor-consensusde

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-consensusde:<tag>

   (see `bioconductor-consensusde/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-consensusde| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-consensusde.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-consensusde
   :alt:   (downloads)
.. |docker_bioconductor-consensusde| image:: https://quay.io/repository/biocontainers/bioconductor-consensusde/status
   :target: https://quay.io/repository/biocontainers/bioconductor-consensusde
.. _`bioconductor-consensusde/tags`: https://quay.io/repository/biocontainers/bioconductor-consensusde?tab=tags







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