:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-crisprviz' .. highlight: bash bioconductor-crisprviz ====================== .. conda:recipe:: bioconductor-crisprviz :replaces_section_title: :noindex: Visualization Functions for CRISPR gRNAs :homepage: https://bioconductor.org/packages/3.18/bioc/html/crisprViz.html :license: MIT + file LICENSE :recipe: /`bioconductor-crisprviz `_/`meta.yaml `_ Provides functionalities to visualize and contextualize CRISPR guide RNAs \(gRNAs\) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework. .. conda:package:: bioconductor-crisprviz |downloads_bioconductor-crisprviz| |docker_bioconductor-crisprviz| :versions: ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0`` :depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0`` :depends bioconductor-crisprbase: ``>=1.6.0,<1.7.0`` :depends bioconductor-crisprdesign: ``>=1.4.0,<1.5.0`` :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomicfeatures: ``>=1.54.0,<1.55.0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-gviz: ``>=1.46.0,<1.47.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-crisprviz and update with:: mamba update bioconductor-crisprviz To create a new environment, run:: mamba create --name myenvname bioconductor-crisprviz with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-crisprviz: (see `bioconductor-crisprviz/tags`_ for valid values for ````) .. |downloads_bioconductor-crisprviz| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-crisprviz.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-crisprviz :alt: (downloads) .. |docker_bioconductor-crisprviz| image:: https://quay.io/repository/biocontainers/bioconductor-crisprviz/status :target: https://quay.io/repository/biocontainers/bioconductor-crisprviz .. _`bioconductor-crisprviz/tags`: https://quay.io/repository/biocontainers/bioconductor-crisprviz?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-crisprviz/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-crisprviz/README.html