:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-curatedbreastdata'
.. highlight: bash

bioconductor-curatedbreastdata
==============================

.. conda:recipe:: bioconductor-curatedbreastdata
   :replaces_section_title:
   :noindex:

   Curated breast cancer gene expression data with survival and treatment information

   :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/curatedBreastData.html
   :license: GPL (>= 2)
   :recipe: /`bioconductor-curatedbreastdata <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-curatedbreastdata>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-curatedbreastdata/meta.yaml>`_

   Curated human breast cancer tissue S4 ExpresionSet datasets from over 16 clinical trials comprising over 2\,000 patients. All datasets contain at least one type of outcomes variable and treatment information \(minimum level\: whether they had chemotherapy and whether they had hormonal therapy\). Includes code to post\-process these datasets.


.. conda:package:: bioconductor-curatedbreastdata

   |downloads_bioconductor-curatedbreastdata| |docker_bioconductor-curatedbreastdata|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>2.30.0-0</code>,  <code>2.28.0-0</code>,  <code>2.26.0-0</code>,  <code>2.22.0-1</code>,  <code>2.22.0-0</code>,  <code>2.20.0-0</code>,  <code>2.18.0-1</code>,  <code>2.18.0-0</code>,  <code>2.16.0-0</code>,  </span></summary>
      

      ``2.30.0-0``,  ``2.28.0-0``,  ``2.26.0-0``,  ``2.22.0-1``,  ``2.22.0-0``,  ``2.20.0-0``,  ``2.18.0-1``,  ``2.18.0-0``,  ``2.16.0-0``,  ``2.14.0-0``,  ``2.12.0-1``,  ``2.10.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0``
   :depends bioconductor-biocstyle: ``>=2.30.0,<2.31.0``
   :depends bioconductor-data-packages: ``>=20231203``
   :depends bioconductor-impute: ``>=1.76.0,<1.77.0``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-ggplot2: 
   :depends r-xml: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-curatedbreastdata

   and update with::

      mamba update bioconductor-curatedbreastdata

  To create a new environment, run::

      mamba create --name myenvname bioconductor-curatedbreastdata

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-curatedbreastdata:<tag>

   (see `bioconductor-curatedbreastdata/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-curatedbreastdata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-curatedbreastdata.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-curatedbreastdata
   :alt:   (downloads)
.. |docker_bioconductor-curatedbreastdata| image:: https://quay.io/repository/biocontainers/bioconductor-curatedbreastdata/status
   :target: https://quay.io/repository/biocontainers/bioconductor-curatedbreastdata
.. _`bioconductor-curatedbreastdata/tags`: https://quay.io/repository/biocontainers/bioconductor-curatedbreastdata?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-curatedbreastdata";
        var versions = ["2.30.0","2.28.0","2.26.0","2.22.0","2.22.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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