:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-decipher' .. highlight: bash bioconductor-decipher ===================== .. conda:recipe:: bioconductor-decipher :replaces_section_title: :noindex: Tools for curating\, analyzing\, and manipulating biological sequences :homepage: https://bioconductor.org/packages/3.18/bioc/html/DECIPHER.html :license: GPL-3 :recipe: /`bioconductor-decipher `_/`meta.yaml `_ :links: biotools: :biotools:`DECIPHER` A toolset for deciphering and managing biological sequences. .. conda:package:: bioconductor-decipher |downloads_bioconductor-decipher| |docker_bioconductor-decipher| :versions: .. raw:: html
2.30.0-02.28.0-02.26.0-12.26.0-02.22.0-22.22.0-12.22.0-02.20.0-02.18.1-0 ``2.30.0-0``,  ``2.28.0-0``,  ``2.26.0-1``,  ``2.26.0-0``,  ``2.22.0-2``,  ``2.22.0-1``,  ``2.22.0-0``,  ``2.20.0-0``,  ``2.18.1-0``,  ``2.18.0-0``,  ``2.16.0-0``,  ``2.14.0-0``,  ``2.12.0-1``,  ``2.10.0-0``,  ``2.8.1-0``,  ``2.6.0-1``,  ``2.6.0-0`` .. raw:: html
:depends bioconductor-biostrings: ``>=2.70.0,<2.71.0`` :depends bioconductor-biostrings: ``>=2.70.1,<2.71.0a0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0a0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-s4vectors: ``>=0.40.2,<0.41.0a0`` :depends bioconductor-xvector: ``>=0.42.0,<0.43.0`` :depends bioconductor-xvector: ``>=0.42.0,<0.43.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dbi: :depends r-rsqlite: ``>=1.1`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-decipher and update with:: mamba update bioconductor-decipher To create a new environment, run:: mamba create --name myenvname bioconductor-decipher with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-decipher: (see `bioconductor-decipher/tags`_ for valid values for ````) .. |downloads_bioconductor-decipher| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-decipher.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-decipher :alt: (downloads) .. |docker_bioconductor-decipher| image:: https://quay.io/repository/biocontainers/bioconductor-decipher/status :target: https://quay.io/repository/biocontainers/bioconductor-decipher .. _`bioconductor-decipher/tags`: https://quay.io/repository/biocontainers/bioconductor-decipher?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-decipher/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-decipher/README.html