:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-depecher'
.. highlight: bash

bioconductor-depecher
=====================

.. conda:recipe:: bioconductor-depecher
   :replaces_section_title:
   :noindex:

   Determination of essential phenotypic elements of clusters in high\-dimensional entities

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/DepecheR.html
   :license: MIT + file LICENSE
   :recipe: /`bioconductor-depecher <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-depecher>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-depecher/meta.yaml>`_

   The purpose of this package is to identify traits in a dataset that can separate groups. This is done on two levels. First\, clustering is performed\, using an implementation of sparse K\-means. Secondly\, the generated clusters are used to predict outcomes of groups of individuals based on their distribution of observations in the different clusters. As certain clusters with separating information will be identified\, and these clusters are defined by a sparse number of variables\, this method can reduce the complexity of data\, to only emphasize the data that actually matters.


.. conda:package:: bioconductor-depecher

   |downloads_bioconductor-depecher| |docker_bioconductor-depecher|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.18.0-0</code>,  <code>1.16.0-0</code>,  <code>1.14.0-1</code>,  <code>1.14.0-0</code>,  <code>1.10.0-2</code>,  <code>1.10.0-1</code>,  <code>1.10.0-0</code>,  <code>1.8.0-0</code>,  <code>1.6.0-1</code>,  </span></summary>
      

      ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.10.0-2``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.3-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-mixomics: ``>=6.26.0,<6.27.0``
   :depends bioconductor-mixomics: ``>=6.26.0,<6.27.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends libstdcxx-ng: ``>=12``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-beanplot: ``>=1.2``
   :depends r-collapse: ``>=1.9.2``
   :depends r-dosnow: ``>=1.0.16``
   :depends r-dplyr: ``>=0.7.8``
   :depends r-fnn: ``>=1.1.3``
   :depends r-foreach: ``>=1.4.4``
   :depends r-ggplot2: ``>=3.1.0``
   :depends r-gmodels: ``>=2.18.1``
   :depends r-gplots: ``>=3.0.1``
   :depends r-mass: ``>=7.3.51``
   :depends r-matrixstats: ``>=0.54.0``
   :depends r-moments: ``>=0.14``
   :depends r-rcpp: ``>=1.0.0``
   :depends r-rcppeigen: 
   :depends r-reshape2: ``>=1.4.3``
   :depends r-robustbase: ``>=0.93.5``
   :depends r-viridis: ``>=0.5.1``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-depecher

   and update with::

      mamba update bioconductor-depecher

  To create a new environment, run::

      mamba create --name myenvname bioconductor-depecher

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-depecher:<tag>

   (see `bioconductor-depecher/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-depecher| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-depecher.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-depecher
   :alt:   (downloads)
.. |docker_bioconductor-depecher| image:: https://quay.io/repository/biocontainers/bioconductor-depecher/status
   :target: https://quay.io/repository/biocontainers/bioconductor-depecher
.. _`bioconductor-depecher/tags`: https://quay.io/repository/biocontainers/bioconductor-depecher?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-depecher";
        var versions = ["1.18.0","1.16.0","1.14.0","1.14.0","1.10.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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