:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-derfinderplot' .. highlight: bash bioconductor-derfinderplot ========================== .. conda:recipe:: bioconductor-derfinderplot :replaces_section_title: :noindex: Plotting functions for derfinder :homepage: https://bioconductor.org/packages/3.18/bioc/html/derfinderPlot.html :license: Artistic-2.0 :recipe: /`bioconductor-derfinderplot `_/`meta.yaml `_ :links: biotools: :biotools:`derfinderplot` This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder. .. conda:package:: bioconductor-derfinderplot |downloads_bioconductor-derfinderplot| |docker_bioconductor-derfinderplot| :versions: .. raw:: html
1.36.0-01.34.0-01.32.0-01.27.1-01.26.0-01.24.1-01.24.0-01.22.0-01.20.0-0 ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.27.1-0``,  ``1.26.0-0``,  ``1.24.1-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.1-0``,  ``1.16.1-0``,  ``1.14.0-0``,  ``1.12.0-0`` .. raw:: html
:depends bioconductor-derfinder: ``>=1.36.0,<1.37.0`` :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomicfeatures: ``>=1.54.0,<1.55.0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-ggbio: ``>=1.50.0,<1.51.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-ggplot2: :depends r-plyr: :depends r-rcolorbrewer: :depends r-reshape2: :depends r-scales: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-derfinderplot and update with:: mamba update bioconductor-derfinderplot To create a new environment, run:: mamba create --name myenvname bioconductor-derfinderplot with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-derfinderplot: (see `bioconductor-derfinderplot/tags`_ for valid values for ````) .. |downloads_bioconductor-derfinderplot| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-derfinderplot.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-derfinderplot :alt: (downloads) .. |docker_bioconductor-derfinderplot| image:: https://quay.io/repository/biocontainers/bioconductor-derfinderplot/status :target: https://quay.io/repository/biocontainers/bioconductor-derfinderplot .. _`bioconductor-derfinderplot/tags`: https://quay.io/repository/biocontainers/bioconductor-derfinderplot?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-derfinderplot/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-derfinderplot/README.html