:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-dmrcatedata' .. highlight: bash bioconductor-dmrcatedata ======================== .. conda:recipe:: bioconductor-dmrcatedata :replaces_section_title: :noindex: Data Package for DMRcate :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/DMRcatedata.html :license: GPL-3 :recipe: /`bioconductor-dmrcatedata `_/`meta.yaml `_ This package contains 9 data objects supporting functionality and examples of the Bioconductor package DMRcate. .. conda:package:: bioconductor-dmrcatedata |downloads_bioconductor-dmrcatedata| |docker_bioconductor-dmrcatedata| :versions: .. raw:: html
2.20.0-02.18.0-02.16.0-02.12.0-12.12.0-02.10.0-02.8.2-02.8.0-02.6.0-0 ``2.20.0-0``,  ``2.18.0-0``,  ``2.16.0-0``,  ``2.12.0-1``,  ``2.12.0-0``,  ``2.10.0-0``,  ``2.8.2-0``,  ``2.8.0-0``,  ``2.6.0-0``,  ``2.2.0-0``,  ``1.20.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0`` .. raw:: html
:depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-genomicfeatures: ``>=1.54.0,<1.55.0`` :depends bioconductor-gviz: ``>=1.46.0,<1.47.0`` :depends bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19: ``>=0.6.0,<0.7.0`` :depends bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19: ``>=0.6.0,<0.7.0`` :depends bioconductor-rtracklayer: ``>=1.62.0,<1.63.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-plyr: :depends r-readxl: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-dmrcatedata and update with:: mamba update bioconductor-dmrcatedata To create a new environment, run:: mamba create --name myenvname bioconductor-dmrcatedata with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-dmrcatedata: (see `bioconductor-dmrcatedata/tags`_ for valid values for ````) .. |downloads_bioconductor-dmrcatedata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-dmrcatedata.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-dmrcatedata :alt: (downloads) .. |docker_bioconductor-dmrcatedata| image:: https://quay.io/repository/biocontainers/bioconductor-dmrcatedata/status :target: https://quay.io/repository/biocontainers/bioconductor-dmrcatedata .. _`bioconductor-dmrcatedata/tags`: https://quay.io/repository/biocontainers/bioconductor-dmrcatedata?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-dmrcatedata/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-dmrcatedata/README.html