:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-dropletutils' .. highlight: bash bioconductor-dropletutils ========================= .. conda:recipe:: bioconductor-dropletutils :replaces_section_title: :noindex: Utilities for Handling Single\-Cell Droplet Data :homepage: https://bioconductor.org/packages/3.20/bioc/html/DropletUtils.html :license: GPL-3 :recipe: /`bioconductor-dropletutils `_/`meta.yaml `_ :links: biotools: :biotools:`DropletUtils` Provides a number of utility functions for handling single\-cell \(RNA\-seq\) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files\, identification of cells from empty droplets\, removal of barcode\-swapped pseudo\-cells\, and downsampling of the count matrix. .. conda:package:: bioconductor-dropletutils |downloads_bioconductor-dropletutils| |docker_bioconductor-dropletutils| :versions: .. raw:: html
1.26.0-11.26.0-01.22.0-01.20.0-01.18.0-11.18.0-01.14.2-11.14.2-01.14.0-0 ``1.26.0-1``,  ``1.26.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.14.2-1``,  ``1.14.2-0``,  ``1.14.0-0``,  ``1.12.1-0``,  ``1.12.0-0``,  ``1.10.3-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.4.2-0``,  ``1.2.1-0``,  ``1.0.3-0`` .. raw:: html
:depends bioconductor-beachmat: ``>=2.22.0,<2.23.0`` :depends bioconductor-beachmat: ``>=2.22.0,<2.23.0a0`` :depends bioconductor-biocgenerics: ``>=0.52.0,<0.53.0`` :depends bioconductor-biocgenerics: ``>=0.52.0,<0.53.0a0`` :depends bioconductor-biocparallel: ``>=1.40.0,<1.41.0`` :depends bioconductor-biocparallel: ``>=1.40.0,<1.41.0a0`` :depends bioconductor-delayedarray: ``>=0.32.0,<0.33.0`` :depends bioconductor-delayedarray: ``>=0.32.0,<0.33.0a0`` :depends bioconductor-delayedmatrixstats: ``>=1.28.0,<1.29.0`` :depends bioconductor-delayedmatrixstats: ``>=1.28.0,<1.29.0a0`` :depends bioconductor-edger: ``>=4.4.0,<4.5.0`` :depends bioconductor-edger: ``>=4.4.0,<4.5.0a0`` :depends bioconductor-genomicranges: ``>=1.58.0,<1.59.0`` :depends bioconductor-genomicranges: ``>=1.58.0,<1.59.0a0`` :depends bioconductor-hdf5array: ``>=1.34.0,<1.35.0`` :depends bioconductor-hdf5array: ``>=1.34.0,<1.35.0a0`` :depends bioconductor-iranges: ``>=2.40.0,<2.41.0`` :depends bioconductor-iranges: ``>=2.40.0,<2.41.0a0`` :depends bioconductor-rhdf5: ``>=2.50.0,<2.51.0`` :depends bioconductor-rhdf5: ``>=2.50.0,<2.51.0a0`` :depends bioconductor-rhdf5lib: ``>=1.28.0,<1.29.0`` :depends bioconductor-rhdf5lib: ``>=1.28.0,<1.29.0a0`` :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0`` :depends bioconductor-s4vectors: ``>=0.44.0,<0.45.0a0`` :depends bioconductor-scuttle: ``>=1.16.0,<1.17.0`` :depends bioconductor-scuttle: ``>=1.16.0,<1.17.0a0`` :depends bioconductor-singlecellexperiment: ``>=1.28.0,<1.29.0`` :depends bioconductor-singlecellexperiment: ``>=1.28.0,<1.29.0a0`` :depends bioconductor-sparsearray: ``>=1.6.0,<1.7.0`` :depends bioconductor-sparsearray: ``>=1.6.0,<1.7.0a0`` :depends bioconductor-summarizedexperiment: ``>=1.36.0,<1.37.0`` :depends bioconductor-summarizedexperiment: ``>=1.36.0,<1.37.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc: ``>=13`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx: ``>=13`` :depends libzlib: ``>=1.3.1,<2.0a0`` :depends r-base: ``>=4.4,<4.5.0a0`` :depends r-bh: :depends r-dqrng: :depends r-matrix: :depends r-r.utils: :depends r-rcpp: :requirements: :additional platforms: .. raw:: html linux-aarch64 .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-dropletutils and update with:: mamba update bioconductor-dropletutils To create a new environment, run:: mamba create --name myenvname bioconductor-dropletutils with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-dropletutils: (see `bioconductor-dropletutils/tags`_ for valid values for ````) .. |downloads_bioconductor-dropletutils| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-dropletutils.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-dropletutils :alt: (downloads) .. |docker_bioconductor-dropletutils| image:: https://quay.io/repository/biocontainers/bioconductor-dropletutils/status :target: https://quay.io/repository/biocontainers/bioconductor-dropletutils .. _`bioconductor-dropletutils/tags`: https://quay.io/repository/biocontainers/bioconductor-dropletutils?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-dropletutils/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-dropletutils/README.html