:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-epinem' .. highlight: bash bioconductor-epinem =================== .. conda:recipe:: bioconductor-epinem :replaces_section_title: :noindex: epiNEM :homepage: https://bioconductor.org/packages/3.18/bioc/html/epiNEM.html :license: GPL-3 :recipe: /`bioconductor-epinem `_/`meta.yaml `_ epiNEM is an extension of the original Nested Effects Models \(NEM\). EpiNEM is able to take into account double knockouts and infer more complex network signalling pathways. It is tailored towards large scale double knock\-out screens. .. conda:package:: bioconductor-epinem |downloads_bioconductor-epinem| |docker_bioconductor-epinem| :versions: ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.1-1``,  ``1.14.1-0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0`` :depends bioconductor-minet: ``>=3.60.0,<3.61.0`` :depends bioconductor-mnem: ``>=1.18.0,<1.19.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-boolnet: :depends r-e1071: :depends r-gtools: :depends r-igraph: :depends r-latex2exp: :depends r-lattice: :depends r-latticeextra: :depends r-pcalg: :depends r-rcolorbrewer: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-epinem and update with:: mamba update bioconductor-epinem To create a new environment, run:: mamba create --name myenvname bioconductor-epinem with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-epinem: (see `bioconductor-epinem/tags`_ for valid values for ````) .. |downloads_bioconductor-epinem| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-epinem.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-epinem :alt: (downloads) .. |docker_bioconductor-epinem| image:: https://quay.io/repository/biocontainers/bioconductor-epinem/status :target: https://quay.io/repository/biocontainers/bioconductor-epinem .. _`bioconductor-epinem/tags`: https://quay.io/repository/biocontainers/bioconductor-epinem?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-epinem/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-epinem/README.html