:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-erssa' .. highlight: bash bioconductor-erssa ================== .. conda:recipe:: bioconductor-erssa :replaces_section_title: :noindex: Empirical RNA\-seq Sample Size Analysis :homepage: https://bioconductor.org/packages/3.18/bioc/html/ERSSA.html :license: GPL-3 | file LICENSE :recipe: /`bioconductor-erssa `_/`meta.yaml `_ The ERSSA package takes user supplied RNA\-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine\, without relying on any a priori assumptions\, whether sufficient differential detection has been acheived with their RNA\-seq dataset. .. conda:package:: bioconductor-erssa |downloads_bioconductor-erssa| |docker_bioconductor-erssa| :versions: .. raw:: html
1.20.0-01.18.0-01.16.0-01.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-0 ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-apeglm: ``>=1.24.0,<1.25.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-deseq2: ``>=1.42.0,<1.43.0`` :depends bioconductor-edger: ``>=4.0.0,<4.1.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-ggplot2: ``>=3.0.0`` :depends r-plyr: ``>=1.8.4`` :depends r-rcolorbrewer: ``>=1.1-2`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-erssa and update with:: mamba update bioconductor-erssa To create a new environment, run:: mamba create --name myenvname bioconductor-erssa with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-erssa: (see `bioconductor-erssa/tags`_ for valid values for ````) .. |downloads_bioconductor-erssa| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-erssa.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-erssa :alt: (downloads) .. |docker_bioconductor-erssa| image:: https://quay.io/repository/biocontainers/bioconductor-erssa/status :target: https://quay.io/repository/biocontainers/bioconductor-erssa .. _`bioconductor-erssa/tags`: https://quay.io/repository/biocontainers/bioconductor-erssa?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-erssa/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-erssa/README.html