:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-esetvis' .. highlight: bash bioconductor-esetvis ==================== .. conda:recipe:: bioconductor-esetvis :replaces_section_title: :noindex: Visualizations of expressionSet Bioconductor object :homepage: https://bioconductor.org/packages/3.18/bioc/html/esetVis.html :license: GPL-3 :recipe: /`bioconductor-esetvis `_/`meta.yaml `_ :links: biotools: :biotools:`esetvis`, doi: :doi:`10.1038/nmeth.3252` Utility functions for visualization of expressionSet \(or SummarizedExperiment\) Bioconductor object\, including spectral map\, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available. .. conda:package:: bioconductor-esetvis |downloads_bioconductor-esetvis| |docker_bioconductor-esetvis| :versions: .. raw:: html
1.28.0-01.26.1-01.24.0-01.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-0 ``1.28.0-0``,  ``1.26.1-0``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.8.0-0``,  ``1.6.3-0``,  ``1.4.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-mlp: ``>=1.50.0,<1.51.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-hexbin: :depends r-mass: :depends r-mpm: :depends r-rtsne: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-esetvis and update with:: mamba update bioconductor-esetvis To create a new environment, run:: mamba create --name myenvname bioconductor-esetvis with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-esetvis: (see `bioconductor-esetvis/tags`_ for valid values for ````) .. |downloads_bioconductor-esetvis| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-esetvis.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-esetvis :alt: (downloads) .. |docker_bioconductor-esetvis| image:: https://quay.io/repository/biocontainers/bioconductor-esetvis/status :target: https://quay.io/repository/biocontainers/bioconductor-esetvis .. _`bioconductor-esetvis/tags`: https://quay.io/repository/biocontainers/bioconductor-esetvis?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-esetvis/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-esetvis/README.html