:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-flowbin'
.. highlight: bash

bioconductor-flowbin
====================

.. conda:recipe:: bioconductor-flowbin
   :replaces_section_title:
   :noindex:

   Combining multitube flow cytometry data by binning

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/flowBin.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-flowbin <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-flowbin>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-flowbin/meta.yaml>`_

   Software to combine flow cytometry data that has been multiplexed into multiple tubes with common markers between them\, by establishing common bins across tubes in terms of the common markers\, then determining expression within each tube for each bin in terms of the tube\-specific markers.


.. conda:package:: bioconductor-flowbin

   |downloads_bioconductor-flowbin| |docker_bioconductor-flowbin|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.38.0-0</code>,  <code>1.36.0-0</code>,  <code>1.34.0-0</code>,  <code>1.30.0-0</code>,  <code>1.28.0-0</code>,  <code>1.26.0-1</code>,  <code>1.26.0-0</code>,  <code>1.24.0-0</code>,  <code>1.22.0-0</code>,  </span></summary>
      

      ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-1``,  ``1.18.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-flowcore: ``>=2.14.0,<2.15.0``
   :depends bioconductor-flowfp: ``>=1.60.0,<1.61.0``
   :depends bioconductor-limma: ``>=3.58.0,<3.59.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-class: 
   :depends r-snow: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-flowbin

   and update with::

      mamba update bioconductor-flowbin

  To create a new environment, run::

      mamba create --name myenvname bioconductor-flowbin

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-flowbin:<tag>

   (see `bioconductor-flowbin/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-flowbin| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-flowbin.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-flowbin
   :alt:   (downloads)
.. |docker_bioconductor-flowbin| image:: https://quay.io/repository/biocontainers/bioconductor-flowbin/status
   :target: https://quay.io/repository/biocontainers/bioconductor-flowbin
.. _`bioconductor-flowbin/tags`: https://quay.io/repository/biocontainers/bioconductor-flowbin?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-flowbin";
        var versions = ["1.38.0","1.36.0","1.34.0","1.30.0","1.28.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-flowbin/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-flowbin/README.html