:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-gaga'
.. highlight: bash

bioconductor-gaga
=================

.. conda:recipe:: bioconductor-gaga
   :replaces_section_title:
   :noindex:

   GaGa hierarchical model for high\-throughput data analysis

   :homepage: https://bioconductor.org/packages/3.14/bioc/html/gaga.html
   :license: GPL (>= 2)
   :recipe: /`bioconductor-gaga <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gaga>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gaga/meta.yaml>`_
   :links: biotools: :biotools:`gaga`, doi: :doi:`10.1214/09-aoas244`

   Implements the GaGa model for high\-throughput data analysis\, including differential expression analysis\, supervised gene clustering and classification. Additionally\, it performs sequential sample size calculations using the GaGa and LNNGV models \(the latter from EBarrays package\).


.. conda:package:: bioconductor-gaga

   |downloads_bioconductor-gaga| |docker_bioconductor-gaga|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>2.40.0-1</code>,  <code>2.40.0-0</code>,  <code>2.38.0-0</code>,  <code>2.36.0-1</code>,  <code>2.36.0-0</code>,  <code>2.34.0-0</code>,  <code>2.32.0-0</code>,  <code>2.30.0-1</code>,  <code>2.28.1-0</code>,  </span></summary>
      

      ``2.40.0-1``,  ``2.40.0-0``,  ``2.38.0-0``,  ``2.36.0-1``,  ``2.36.0-0``,  ``2.34.0-0``,  ``2.32.0-0``,  ``2.30.0-1``,  ``2.28.1-0``,  ``2.28.0-0``,  ``2.26.0-0``,  ``2.24.0-0``,  ``2.22.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biobase: ``>=2.54.0,<2.55.0``
   :depends bioconductor-ebarrays: ``>=2.58.0,<2.59.0``
   :depends libblas: ``>=3.8.0,<4.0a0``
   :depends libgcc-ng: ``>=10.3.0``
   :depends liblapack: ``>=3.8.0,<4.0a0``
   :depends r-base: ``>=4.1,<4.2.0a0``
   :depends r-coda: 
   :depends r-mgcv: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-gaga

   and update with::

      conda update bioconductor-gaga

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-gaga:<tag>

   (see `bioconductor-gaga/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-gaga| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gaga.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-gaga
   :alt:   (downloads)
.. |docker_bioconductor-gaga| image:: https://quay.io/repository/biocontainers/bioconductor-gaga/status
   :target: https://quay.io/repository/biocontainers/bioconductor-gaga
.. _`bioconductor-gaga/tags`: https://quay.io/repository/biocontainers/bioconductor-gaga?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-gaga";
        var versions = ["2.40.0","2.40.0","2.38.0","2.36.0","2.36.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gaga/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-gaga/README.html