:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-genefu' .. highlight: bash bioconductor-genefu =================== .. conda:recipe:: bioconductor-genefu :replaces_section_title: :noindex: Computation of Gene Expression\-Based Signatures in Breast Cancer :homepage: https://bioconductor.org/packages/3.18/bioc/html/genefu.html :license: Artistic-2.0 :recipe: /`bioconductor-genefu `_/`meta.yaml `_ :links: biotools: :biotools:`genefu`, doi: :doi:`10.1093/bioinformatics/btv693` This package contains functions implementing various tasks usually required by gene expression analysis\, especially in breast cancer studies\: gene mapping between different microarray platforms\, identification of molecular subtypes\, implementation of published gene signatures\, gene selection\, and survival analysis. .. conda:package:: bioconductor-genefu |downloads_bioconductor-genefu| |docker_bioconductor-genefu| :versions: .. raw:: html
2.34.0-02.32.0-02.30.0-02.26.0-02.24.2-02.22.1-02.22.0-02.20.0-02.18.0-0 ``2.34.0-0``,  ``2.32.0-0``,  ``2.30.0-0``,  ``2.26.0-0``,  ``2.24.2-0``,  ``2.22.1-0``,  ``2.22.0-0``,  ``2.20.0-0``,  ``2.18.0-0``,  ``2.16.0-1``,  ``2.14.0-0``,  ``2.12.0-0``,  ``2.10.0-0`` .. raw:: html
:depends bioconductor-aims: ``>=1.34.0,<1.35.0`` :depends bioconductor-biomart: ``>=2.58.0,<2.59.0`` :depends bioconductor-impute: ``>=1.76.0,<1.77.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-survcomp: ``>=1.52.0,<1.53.0`` :depends r-amap: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-ic10: :depends r-mclust: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-genefu and update with:: mamba update bioconductor-genefu To create a new environment, run:: mamba create --name myenvname bioconductor-genefu with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-genefu: (see `bioconductor-genefu/tags`_ for valid values for ````) .. |downloads_bioconductor-genefu| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-genefu.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-genefu :alt: (downloads) .. |docker_bioconductor-genefu| image:: https://quay.io/repository/biocontainers/bioconductor-genefu/status :target: https://quay.io/repository/biocontainers/bioconductor-genefu .. _`bioconductor-genefu/tags`: https://quay.io/repository/biocontainers/bioconductor-genefu?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genefu/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-genefu/README.html