:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-genega' .. highlight: bash bioconductor-genega =================== .. conda:recipe:: bioconductor-genega :replaces_section_title: :noindex: Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm :homepage: https://bioconductor.org/packages/3.18/bioc/html/GeneGA.html :license: GPL version 2 :recipe: /`bioconductor-genega `_/`meta.yaml `_ R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias\, GeneGA includes the information of highly expressed genes of almost 200 genomes. Meanwhile\, Vienna RNA Package is needed to ensure GeneGA to function properly. .. conda:package:: bioconductor-genega |downloads_bioconductor-genega| |docker_bioconductor-genega| :versions: .. raw:: html
1.52.0-01.48.0-01.44.0-01.42.0-01.40.0-11.40.0-01.38.0-01.36.0-01.34.0-1 ``1.52.0-0``,  ``1.48.0-0``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-1``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-0`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-hash: :depends r-seqinr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-genega and update with:: mamba update bioconductor-genega To create a new environment, run:: mamba create --name myenvname bioconductor-genega with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-genega: (see `bioconductor-genega/tags`_ for valid values for ````) .. |downloads_bioconductor-genega| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-genega.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-genega :alt: (downloads) .. |docker_bioconductor-genega| image:: https://quay.io/repository/biocontainers/bioconductor-genega/status :target: https://quay.io/repository/biocontainers/bioconductor-genega .. _`bioconductor-genega/tags`: https://quay.io/repository/biocontainers/bioconductor-genega?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genega/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-genega/README.html