:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-generecommender' .. highlight: bash bioconductor-generecommender ============================ .. conda:recipe:: bioconductor-generecommender :replaces_section_title: :noindex: A gene recommender algorithm to identify genes coexpressed with a query set of genes :homepage: https://bioconductor.org/packages/3.18/bioc/html/geneRecommender.html :license: GPL (>= 2) :recipe: /`bioconductor-generecommender `_/`meta.yaml `_ :links: biotools: :biotools:`generecommender`, doi: :doi:`10.1101/gr.1125403` This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions. .. conda:package:: bioconductor-generecommender |downloads_bioconductor-generecommender| |docker_bioconductor-generecommender| :versions: .. raw:: html
1.74.0-01.72.0-01.70.0-01.66.0-01.64.0-01.62.0-11.62.0-01.60.0-01.58.0-0 ``1.74.0-0``,  ``1.72.0-0``,  ``1.70.0-0``,  ``1.66.0-0``,  ``1.64.0-0``,  ``1.62.0-1``,  ``1.62.0-0``,  ``1.60.0-0``,  ``1.58.0-0``,  ``1.56.0-1``,  ``1.54.0-1``,  ``1.54.0-0``,  ``1.52.0-0``,  ``1.50.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-generecommender and update with:: mamba update bioconductor-generecommender To create a new environment, run:: mamba create --name myenvname bioconductor-generecommender with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-generecommender: (see `bioconductor-generecommender/tags`_ for valid values for ````) .. |downloads_bioconductor-generecommender| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-generecommender.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-generecommender :alt: (downloads) .. |docker_bioconductor-generecommender| image:: https://quay.io/repository/biocontainers/bioconductor-generecommender/status :target: https://quay.io/repository/biocontainers/bioconductor-generecommender .. _`bioconductor-generecommender/tags`: https://quay.io/repository/biocontainers/bioconductor-generecommender?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-generecommender/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-generecommender/README.html